Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Gm11536-201ENSMUST00000130733 535 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Col28a1Q2UY11 Slc25a5-201ENSMUST00000016463 1240 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Col28a1Q2UY11 Tpi-rs2-201ENSMUST00000182471 756 ntBASIC14.03□□□□□ -0.16
Col28a1Q2UY11 Rpl31-205ENSMUST00000194746 703 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Col28a1Q2UY11 1500035N22Rik-201ENSMUST00000075081 865 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Col28a1Q2UY11 Krtap19-3-201ENSMUST00000075284 526 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Col28a1Q2UY11 Dmkn-205ENSMUST00000165887 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Col28a1Q2UY11 Ash2l-202ENSMUST00000110608 2134 ntTSL 5 BASIC14.03□□□□□ -0.16
Col28a1Q2UY11 Rbbp5-206ENSMUST00000190825 2456 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Col28a1Q2UY11 Tmc8-202ENSMUST00000106334 2644 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Col28a1Q2UY11 Six3os1-211ENSMUST00000176958 2889 ntTSL 2 BASIC14.03□□□□□ -0.16
Col28a1Q2UY11 Zfp318-204ENSMUST00000138127 3936 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Col28a1Q2UY11 Stt3b-201ENSMUST00000035010 4221 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Col28a1Q2UY11 Camta1-211ENSMUST00000169423 5208 ntAPPRIS P2 TSL 5 BASIC14.02□□□□□ -0.16
Col28a1Q2UY11 Pard3-222ENSMUST00000162536 5175 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
Col28a1Q2UY11 Tmem164-202ENSMUST00000101198 4443 ntTSL 3 BASIC14.02□□□□□ -0.16
Col28a1Q2UY11 Zfp664-201ENSMUST00000111417 4092 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Col28a1Q2UY11 Gpr45-203ENSMUST00000179766 3776 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Col28a1Q2UY11 Fam234a-201ENSMUST00000114988 3714 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Col28a1Q2UY11 Rbm34-201ENSMUST00000045994 3424 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Col28a1Q2UY11 Six1-201ENSMUST00000050029 3316 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Col28a1Q2UY11 Hsph1-205ENSMUST00000201452 3140 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Col28a1Q2UY11 Dnajb12-205ENSMUST00000147914 3041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Col28a1Q2UY11 Aldh16a1-201ENSMUST00000107815 2685 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Col28a1Q2UY11 Slc4a1ap-213ENSMUST00000202950 2499 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
Col28a1Q2UY11 Aifm3-202ENSMUST00000115685 2357 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Col28a1Q2UY11 Ociad2-205ENSMUST00000201908 2378 ntTSL 2 BASIC14.02□□□□□ -0.16
Col28a1Q2UY11 B4galnt1-201ENSMUST00000006914 2395 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Col28a1Q2UY11 Vamp8-202ENSMUST00000142613 2076 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Col28a1Q2UY11 Col3a1-201ENSMUST00000087883 5564 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Col28a1Q2UY11 Acin1-224ENSMUST00000167015 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Col28a1Q2UY11 Exosc5-206ENSMUST00000206561 1680 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Col28a1Q2UY11 Carmil3-201ENSMUST00000076236 4602 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
Col28a1Q2UY11 Pear1-205ENSMUST00000172621 4490 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Col28a1Q2UY11 Trim27-201ENSMUST00000021761 4204 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Col28a1Q2UY11 Klhl21-201ENSMUST00000097773 3986 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Col28a1Q2UY11 Fbxo41-202ENSMUST00000161078 6562 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Col28a1Q2UY11 Thap7-201ENSMUST00000100125 1248 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Col28a1Q2UY11 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
Col28a1Q2UY11 Zfp787-206ENSMUST00000208746 535 ntTSL 2 BASIC14.02□□□□□ -0.17
Col28a1Q2UY11 AC155729.1-201ENSMUST00000227758 544 ntBASIC14.02□□□□□ -0.17
Col28a1Q2UY11 Rogdi-202ENSMUST00000090453 652 ntTSL 5 BASIC14.02□□□□□ -0.17
Col28a1Q2UY11 Usp1-202ENSMUST00000091358 3527 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Col28a1Q2UY11 Nomo1-201ENSMUST00000033121 4257 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Col28a1Q2UY11 Sh3glb1-201ENSMUST00000163279 3961 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Col28a1Q2UY11 Tagap1-201ENSMUST00000063683 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Col28a1Q2UY11 Phka2-202ENSMUST00000112376 2310 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Col28a1Q2UY11 Synm-201ENSMUST00000051389 6953 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Col28a1Q2UY11 Sipa1-204ENSMUST00000169854 3583 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
Col28a1Q2UY11 Wdr73-201ENSMUST00000026816 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Col28a1Q2UY11 Fam174a-202ENSMUST00000186780 3460 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Col28a1Q2UY11 Fam57b-202ENSMUST00000098032 1894 ntTSL 5 BASIC14.01□□□□□ -0.17
Col28a1Q2UY11 Fam76a-201ENSMUST00000030696 3053 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col28a1Q2UY11 Slc4a4-207ENSMUST00000148750 7931 ntAPPRIS P3 TSL 5 BASIC14.01□□□□□ -0.17
Col28a1Q2UY11 Pam-201ENSMUST00000058762 4095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col28a1Q2UY11 Disp2-204ENSMUST00000110846 1732 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Col28a1Q2UY11 Mtss1-201ENSMUST00000080371 4938 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col28a1Q2UY11 Dnase1l1-201ENSMUST00000019232 1625 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col28a1Q2UY11 Gjb1-203ENSMUST00000119190 1585 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
Col28a1Q2UY11 Slc16a13-201ENSMUST00000060010 2531 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col28a1Q2UY11 Aspm-205ENSMUST00000200083 6072 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Col28a1Q2UY11 Rgs6-203ENSMUST00000185665 2201 ntAPPRIS P4 TSL 5 BASIC14.01□□□□□ -0.17
Col28a1Q2UY11 Nos1ap-202ENSMUST00000160456 3022 ntAPPRIS P2 TSL 5 BASIC14.01□□□□□ -0.17
Col28a1Q2UY11 Etfrf1-204ENSMUST00000111723 842 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Col28a1Q2UY11 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col28a1Q2UY11 Gm13403-202ENSMUST00000134271 674 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Col28a1Q2UY11 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC14.01□□□□□ -0.17
Col28a1Q2UY11 Ctcflos-201ENSMUST00000142165 469 ntTSL 3 BASIC14.01□□□□□ -0.17
Col28a1Q2UY11 Gssos1-201ENSMUST00000142509 716 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Col28a1Q2UY11 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC14.01□□□□□ -0.17
Col28a1Q2UY11 Pxn-213ENSMUST00000202564 2126 ntTSL 5 BASIC14.01□□□□□ -0.17
Col28a1Q2UY11 Gm45683-201ENSMUST00000210825 1247 ntBASIC14.01□□□□□ -0.17
Col28a1Q2UY11 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC14.01□□□□□ -0.17
Col28a1Q2UY11 AC110091.2-202ENSMUST00000216718 1148 ntTSL 5 BASIC14.01□□□□□ -0.17
Col28a1Q2UY11 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col28a1Q2UY11 Sphk2-201ENSMUST00000072836 2968 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col28a1Q2UY11 Gm36447-201ENSMUST00000201101 1978 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Col28a1Q2UY11 Tcp11l1-201ENSMUST00000028597 3512 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col28a1Q2UY11 Fut11-201ENSMUST00000048016 4163 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col28a1Q2UY11 Gm13387-202ENSMUST00000131147 2646 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Col28a1Q2UY11 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Col28a1Q2UY11 Nxpe5-202ENSMUST00000159798 2568 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col28a1Q2UY11 Pde4a-202ENSMUST00000039413 4653 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col28a1Q2UY11 Syngap1-202ENSMUST00000177932 3927 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Col28a1Q2UY11 Csnk1d-201ENSMUST00000018274 3675 ntAPPRIS P4 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col28a1Q2UY11 Skida1-201ENSMUST00000066885 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col28a1Q2UY11 Ate1-201ENSMUST00000033139 4735 ntAPPRIS P4 TSL 1 (best) BASIC14□□□□□ -0.17
Col28a1Q2UY11 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Col28a1Q2UY11 Fbxo10-201ENSMUST00000052236 4635 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Col28a1Q2UY11 D430041D05Rik-201ENSMUST00000089726 10124 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Col28a1Q2UY11 Cald1-201ENSMUST00000031775 2142 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Col28a1Q2UY11 Cdh7-206ENSMUST00000137092 2681 ntTSL 1 (best) BASIC14□□□□□ -0.17
Col28a1Q2UY11 Cyb561a3-201ENSMUST00000168445 1474 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Col28a1Q2UY11 Ppia-206ENSMUST00000213200 1450 ntTSL 5 BASIC14□□□□□ -0.17
Col28a1Q2UY11 Gng4-201ENSMUST00000021734 3179 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Col28a1Q2UY11 Nop9-201ENSMUST00000019441 3694 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Col28a1Q2UY11 Arhgap10-201ENSMUST00000076316 3084 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Col28a1Q2UY11 Pglyrp2-201ENSMUST00000114455 1915 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Col28a1Q2UY11 2010300F17Rik-202ENSMUST00000181758 2493 ntTSL 1 (best) BASIC14□□□□□ -0.17
Col28a1Q2UY11 Ankrd27-202ENSMUST00000186245 1926 ntTSL 1 (best) BASIC14□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 54.2 ms