Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sdc1P18828 Gm45630-201ENSMUST00000210243 1911 ntBASIC11.83□□□□□ -0.52
Sdc1P18828 Sde2-201ENSMUST00000038091 3213 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sdc1P18828 Lypd6-201ENSMUST00000053208 3620 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sdc1P18828 Stra8-201ENSMUST00000031876 1803 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sdc1P18828 Dmbx1-201ENSMUST00000064806 5799 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sdc1P18828 Gm2155-201ENSMUST00000181581 1974 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Sdc1P18828 Mier3-203ENSMUST00000109272 5279 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sdc1P18828 Zyx-202ENSMUST00000164375 3188 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sdc1P18828 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sdc1P18828 Gm15477-201ENSMUST00000140578 2130 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Sdc1P18828 Grm5-204ENSMUST00000155358 4500 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sdc1P18828 Pla2g5-204ENSMUST00000102513 2289 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
Sdc1P18828 Plxdc1-203ENSMUST00000107565 2439 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Sdc1P18828 Cbs-203ENSMUST00000118504 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sdc1P18828 Slc8b1-203ENSMUST00000111889 1624 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Sdc1P18828 Emc7-201ENSMUST00000069747 5826 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sdc1P18828 Olfr71-202ENSMUST00000107862 2587 ntAPPRIS P1 TSL 3 BASIC11.82□□□□□ -0.52
Sdc1P18828 Fcgr1-201ENSMUST00000029748 2589 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sdc1P18828 Ddi2-202ENSMUST00000177592 3539 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Sdc1P18828 Eno1b-201ENSMUST00000076155 1757 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sdc1P18828 Acbd5-208ENSMUST00000226571 3802 ntAPPRIS ALT2 BASIC11.82□□□□□ -0.52
Sdc1P18828 Olfr533-203ENSMUST00000215308 2345 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Sdc1P18828 Rinl-201ENSMUST00000059857 2871 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sdc1P18828 Mllt6-201ENSMUST00000044730 7274 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sdc1P18828 Ccdc85a-204ENSMUST00000109502 5220 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Sdc1P18828 Cenpl-203ENSMUST00000111620 1910 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sdc1P18828 Mpl-201ENSMUST00000006556 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sdc1P18828 Fam13b-201ENSMUST00000040506 3343 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sdc1P18828 Spib-201ENSMUST00000035323 2788 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sdc1P18828 Kmt5b-205ENSMUST00000113972 4159 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Sdc1P18828 Kcnk13-201ENSMUST00000049788 3078 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sdc1P18828 Sesn3-201ENSMUST00000034507 1827 ntTSL 5 BASIC11.82□□□□□ -0.52
Sdc1P18828 Gm13055-201ENSMUST00000127875 1961 ntTSL 5 BASIC11.82□□□□□ -0.52
Sdc1P18828 Gm26593-201ENSMUST00000181848 1970 ntTSL 5 BASIC11.82□□□□□ -0.52
Sdc1P18828 Olfr55-201ENSMUST00000112168 948 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Sdc1P18828 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Sdc1P18828 Mir5122-201ENSMUST00000175004 89 ntBASIC11.82□□□□□ -0.52
Sdc1P18828 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sdc1P18828 Gm21863-201ENSMUST00000179133 336 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Sdc1P18828 Gm27011-201ENSMUST00000182352 972 ntBASIC11.82□□□□□ -0.52
Sdc1P18828 Gm8495-201ENSMUST00000188740 694 ntBASIC11.82□□□□□ -0.52
Sdc1P18828 Gm29246-201ENSMUST00000189221 349 ntTSL 3 BASIC11.82□□□□□ -0.52
Sdc1P18828 Ttc32-203ENSMUST00000219488 768 ntTSL 3 BASIC11.82□□□□□ -0.52
Sdc1P18828 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC11.82□□□□□ -0.52
Sdc1P18828 AC112142.1-201ENSMUST00000228796 918 ntBASIC11.82□□□□□ -0.52
Sdc1P18828 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sdc1P18828 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sdc1P18828 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sdc1P18828 1700037C18Rik-202ENSMUST00000115859 2592 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sdc1P18828 Tigd2-201ENSMUST00000062626 3007 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sdc1P18828 Phgdh-201ENSMUST00000065793 1893 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sdc1P18828 Caskin2-201ENSMUST00000041684 4929 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sdc1P18828 Pnkp-201ENSMUST00000003044 2184 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sdc1P18828 Rab11fip1-202ENSMUST00000054212 7965 ntAPPRIS P3 TSL 5 BASIC11.82□□□□□ -0.52
Sdc1P18828 Me2-201ENSMUST00000025439 2455 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sdc1P18828 Plk4-203ENSMUST00000203295 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sdc1P18828 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sdc1P18828 Mnt-201ENSMUST00000000291 4590 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sdc1P18828 Rapsn-201ENSMUST00000050323 1606 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sdc1P18828 Rnf10-202ENSMUST00000112096 3112 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sdc1P18828 Ebf1-202ENSMUST00000101326 3422 ntAPPRIS ALT1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sdc1P18828 Ntrk2-204ENSMUST00000224259 3049 ntBASIC11.81□□□□□ -0.52
Sdc1P18828 Tbc1d16-201ENSMUST00000036113 6986 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sdc1P18828 Ppcdc-209ENSMUST00000214624 1814 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Sdc1P18828 Cggbp1-201ENSMUST00000067744 4425 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sdc1P18828 Galnt6os-201ENSMUST00000160960 1389 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Sdc1P18828 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC11.81□□□□□ -0.52
Sdc1P18828 Osbpl1a-201ENSMUST00000074352 3956 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sdc1P18828 Kirrel-203ENSMUST00000159976 7236 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sdc1P18828 Rreb1-202ENSMUST00000110237 4617 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Sdc1P18828 5031415H12Rik-201ENSMUST00000181546 2481 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Sdc1P18828 Gnb1l-211ENSMUST00000167778 3569 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sdc1P18828 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sdc1P18828 Hdac7-202ENSMUST00000088402 4223 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sdc1P18828 Disp2-204ENSMUST00000110846 1732 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Sdc1P18828 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Sdc1P18828 Grin1-202ENSMUST00000114307 4127 ntTSL 5 BASIC11.81□□□□□ -0.52
Sdc1P18828 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC11.81□□□□□ -0.52
Sdc1P18828 Rab3d-201ENSMUST00000115351 3835 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sdc1P18828 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sdc1P18828 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC11.81□□□□□ -0.52
Sdc1P18828 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sdc1P18828 Mzb1-201ENSMUST00000025211 905 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sdc1P18828 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
Sdc1P18828 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC11.81□□□□□ -0.52
Sdc1P18828 Comt-202ENSMUST00000115609 1786 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sdc1P18828 Spg7-202ENSMUST00000125975 2408 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
Sdc1P18828 Atp9b-213ENSMUST00000225980 5150 ntAPPRIS P2 BASIC11.81□□□□□ -0.52
Sdc1P18828 Otub2-201ENSMUST00000021620 2791 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sdc1P18828 Nek6-203ENSMUST00000112902 3147 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Sdc1P18828 Tmem86b-202ENSMUST00000205360 1344 ntTSL 2 BASIC11.81□□□□□ -0.52
Sdc1P18828 Slc41a3-201ENSMUST00000032177 2324 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sdc1P18828 Cxcr5-204ENSMUST00000215293 2846 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sdc1P18828 Tars2-204ENSMUST00000163530 2157 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sdc1P18828 Mecp2-203ENSMUST00000123362 1675 ntTSL 5 BASIC11.81□□□□□ -0.52
Sdc1P18828 Prss36-202ENSMUST00000118755 3028 ntAPPRIS P2 TSL 5 BASIC11.81□□□□□ -0.52
Sdc1P18828 Gsdme-201ENSMUST00000031845 2502 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sdc1P18828 Ap2a1-204ENSMUST00000167930 3376 ntTSL 5 BASIC11.81□□□□□ -0.52
Sdc1P18828 Ankrd6-204ENSMUST00000084750 4444 ntAPPRIS P2 TSL 5 BASIC11.8□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 32.6 ms