Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 4933436I20Rik-202ENSMUST00000190615 1509 ntTSL 5 BASIC16.68■□□□□ 0.26
Col1a1P11087 Gm21983-201ENSMUST00000154724 1690 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
Col1a1P11087 Impdh1-207ENSMUST00000162099 2580 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col1a1P11087 Wbp4-201ENSMUST00000022601 3704 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col1a1P11087 Fam81a-201ENSMUST00000034749 3703 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col1a1P11087 Sh3glb1-202ENSMUST00000198254 5945 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Col1a1P11087 Knop1-203ENSMUST00000106549 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col1a1P11087 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col1a1P11087 Prelid1-201ENSMUST00000021942 2644 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col1a1P11087 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col1a1P11087 Gm13034-201ENSMUST00000121342 3177 ntBASIC16.68■□□□□ 0.26
Col1a1P11087 Acbd5-203ENSMUST00000114526 3725 ntAPPRIS P4 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col1a1P11087 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col1a1P11087 Vax2os-201ENSMUST00000123402 1435 ntTSL 5 BASIC16.67■□□□□ 0.26
Col1a1P11087 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC16.67■□□□□ 0.26
Col1a1P11087 Gm12485-201ENSMUST00000119641 291 ntBASIC16.67■□□□□ 0.26
Col1a1P11087 Fbxw4-209ENSMUST00000162433 789 ntTSL 3 BASIC16.67■□□□□ 0.26
Col1a1P11087 Gm27572-201ENSMUST00000183702 255 ntBASIC16.67■□□□□ 0.26
Col1a1P11087 Selenoh-205ENSMUST00000189636 499 ntAPPRIS ALT2 TSL 3 BASIC16.67■□□□□ 0.26
Col1a1P11087 Gm44397-201ENSMUST00000195950 113 ntBASIC16.67■□□□□ 0.26
Col1a1P11087 Gm7172-201ENSMUST00000218047 1152 ntBASIC16.67■□□□□ 0.26
Col1a1P11087 Gm30906-201ENSMUST00000219578 535 ntTSL 3 BASIC16.67■□□□□ 0.26
Col1a1P11087 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col1a1P11087 Gm4858-202ENSMUST00000194595 1810 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Col1a1P11087 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
Col1a1P11087 Sbds-201ENSMUST00000026387 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col1a1P11087 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col1a1P11087 Ptgs1-201ENSMUST00000062069 2867 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col1a1P11087 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col1a1P11087 Mvk-202ENSMUST00000112239 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col1a1P11087 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Col1a1P11087 Yif1a-201ENSMUST00000025811 1493 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col1a1P11087 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col1a1P11087 Cd151-202ENSMUST00000106000 1865 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
Col1a1P11087 Gm4981-201ENSMUST00000099726 1854 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
Col1a1P11087 Map3k8-201ENSMUST00000025078 2507 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col1a1P11087 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col1a1P11087 Slc29a4-201ENSMUST00000058418 2789 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col1a1P11087 Irak1-206ENSMUST00000114354 3835 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col1a1P11087 Gpr137-205ENSMUST00000166115 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col1a1P11087 Siglece-201ENSMUST00000032667 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col1a1P11087 Cenpt-201ENSMUST00000040776 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col1a1P11087 Apol7a-201ENSMUST00000010745 1431 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col1a1P11087 Ntng2-203ENSMUST00000091153 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col1a1P11087 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col1a1P11087 Casd1-201ENSMUST00000015333 3961 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col1a1P11087 Drap1-210ENSMUST00000148219 727 ntTSL 3 BASIC16.67■□□□□ 0.26
Col1a1P11087 Bik-201ENSMUST00000016902 943 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col1a1P11087 2310040G24Rik-202ENSMUST00000189386 775 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Col1a1P11087 Gm43403-202ENSMUST00000198830 370 ntTSL 3 BASIC16.67■□□□□ 0.26
Col1a1P11087 Gm19710-201ENSMUST00000200257 640 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Col1a1P11087 Gm18473-201ENSMUST00000220543 868 ntBASIC16.67■□□□□ 0.26
Col1a1P11087 Cracr2a-201ENSMUST00000071563 1094 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Col1a1P11087 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC16.67■□□□□ 0.26
Col1a1P11087 Gm37015-201ENSMUST00000192763 1521 ntBASIC16.67■□□□□ 0.26
Col1a1P11087 Acadm-201ENSMUST00000072697 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col1a1P11087 Apba3-211ENSMUST00000220297 2268 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
Col1a1P11087 Rbck1-201ENSMUST00000028964 2252 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col1a1P11087 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col1a1P11087 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col1a1P11087 Fam199x-201ENSMUST00000047852 8299 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col1a1P11087 Sphk1-205ENSMUST00000106387 1957 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Col1a1P11087 Ppp1r37-201ENSMUST00000058444 3816 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col1a1P11087 Dnmt3a-205ENSMUST00000172689 2328 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col1a1P11087 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col1a1P11087 Tjp3-201ENSMUST00000045744 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col1a1P11087 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Col1a1P11087 Pgap2-225ENSMUST00000156529 2034 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col1a1P11087 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Col1a1P11087 Gm37812-201ENSMUST00000195216 2475 ntBASIC16.66■□□□□ 0.26
Col1a1P11087 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col1a1P11087 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Col1a1P11087 Rxra-202ENSMUST00000100251 1952 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Col1a1P11087 H13-204ENSMUST00000125366 5204 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col1a1P11087 Rps8-201ENSMUST00000102696 860 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col1a1P11087 Gm20036-201ENSMUST00000177547 844 ntTSL 3 BASIC16.66■□□□□ 0.26
Col1a1P11087 Gm26721-201ENSMUST00000181723 992 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Col1a1P11087 Ighv1-51-201ENSMUST00000192903 354 ntBASIC16.66■□□□□ 0.26
Col1a1P11087 AC144543.1-201ENSMUST00000221840 1064 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Col1a1P11087 Gm34084-201ENSMUST00000222236 1298 ntTSL 5 BASIC16.66■□□□□ 0.26
Col1a1P11087 Cox7a2-201ENSMUST00000034881 659 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col1a1P11087 Haus7-202ENSMUST00000077243 1032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col1a1P11087 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC16.66■□□□□ 0.26
Col1a1P11087 Foxo3-201ENSMUST00000056974 2889 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col1a1P11087 Klk6-203ENSMUST00000107968 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col1a1P11087 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col1a1P11087 Gatm-201ENSMUST00000028624 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col1a1P11087 Klhl11-201ENSMUST00000056665 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col1a1P11087 Fbxl7-201ENSMUST00000059204 4632 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col1a1P11087 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Col1a1P11087 Cnot7-206ENSMUST00000135269 2461 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Col1a1P11087 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col1a1P11087 Slc24a3-201ENSMUST00000081121 1788 ntAPPRIS P2 TSL 5 BASIC16.65■□□□□ 0.26
Col1a1P11087 Acbd6-201ENSMUST00000035560 5592 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col1a1P11087 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC16.65■□□□□ 0.26
Col1a1P11087 Fer-202ENSMUST00000038080 2365 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Col1a1P11087 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col1a1P11087 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Col1a1P11087 Gm5940-201ENSMUST00000117582 1068 ntBASIC16.65■□□□□ 0.26
Col1a1P11087 Gm15317-201ENSMUST00000129569 699 ntTSL 3 BASIC16.65■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 27.9 ms