Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Itgb3-201ENSMUST00000021028 5784 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Chmp6P0C0A3 Gm42632-201ENSMUST00000201707 2411 ntBASIC15.73■□□□□ 0.11
Chmp6P0C0A3 Gm11946-201ENSMUST00000123459 3941 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Chmp6P0C0A3 Gapvd1-202ENSMUST00000102800 8339 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Chmp6P0C0A3 Mrpl58-203ENSMUST00000106539 2522 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Chmp6P0C0A3 Kctd14-205ENSMUST00000206279 2203 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
Chmp6P0C0A3 Spdef-202ENSMUST00000114870 2070 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
Chmp6P0C0A3 Snx8-205ENSMUST00000196566 1914 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
Chmp6P0C0A3 Eif2b2-201ENSMUST00000004910 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Chmp6P0C0A3 Lpar5-203ENSMUST00000171989 1458 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
Chmp6P0C0A3 Gm6018-201ENSMUST00000216090 1306 ntBASIC15.72■□□□□ 0.11
Chmp6P0C0A3 4933412A08Rik-201ENSMUST00000061046 1343 ntBASIC15.72■□□□□ 0.11
Chmp6P0C0A3 Ccnj-201ENSMUST00000025983 3819 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Chmp6P0C0A3 Desi2-201ENSMUST00000027783 8802 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Chmp6P0C0A3 Skap1-205ENSMUST00000107662 1861 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Chmp6P0C0A3 Midn-201ENSMUST00000042057 3727 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
Chmp6P0C0A3 Crybb3-202ENSMUST00000117143 749 ntAPPRIS P1 TSL 3 BASIC15.72■□□□□ 0.11
Chmp6P0C0A3 Nudt6-208ENSMUST00000146324 1264 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Chmp6P0C0A3 Gm44335-201ENSMUST00000196879 141 ntBASIC15.72■□□□□ 0.11
Chmp6P0C0A3 Gm44297-201ENSMUST00000198304 141 ntBASIC15.72■□□□□ 0.11
Chmp6P0C0A3 Gm44346-201ENSMUST00000198851 141 ntBASIC15.72■□□□□ 0.11
Chmp6P0C0A3 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC15.72■□□□□ 0.11
Chmp6P0C0A3 Gm44662-201ENSMUST00000206970 412 ntTSL 5 BASIC15.72■□□□□ 0.11
Chmp6P0C0A3 Gm18057-201ENSMUST00000208220 503 ntBASIC15.72■□□□□ 0.11
Chmp6P0C0A3 Prss29-201ENSMUST00000024993 1178 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Chmp6P0C0A3 3110079O15Rik-201ENSMUST00000027476 478 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Chmp6P0C0A3 Dmrt1-202ENSMUST00000087525 1130 ntTSL 5 BASIC15.72■□□□□ 0.11
Chmp6P0C0A3 Hells-201ENSMUST00000025965 5868 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Chmp6P0C0A3 Gm5105-201ENSMUST00000053318 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Chmp6P0C0A3 Fut11-201ENSMUST00000048016 4163 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Chmp6P0C0A3 Ythdf3-203ENSMUST00000191774 3196 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Chmp6P0C0A3 Fgfr3-201ENSMUST00000067150 4218 ntAPPRIS P4 TSL 1 (best) BASIC15.72■□□□□ 0.11
Chmp6P0C0A3 Bcan-201ENSMUST00000090971 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Chmp6P0C0A3 Slc30a2-201ENSMUST00000081094 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Chmp6P0C0A3 Mink1-203ENSMUST00000079244 4829 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Chmp6P0C0A3 Bet1l-201ENSMUST00000026557 2268 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Chmp6P0C0A3 Tmem39a-214ENSMUST00000171687 2667 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Chmp6P0C0A3 Thumpd1-201ENSMUST00000033236 2689 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Chmp6P0C0A3 Nomo1-201ENSMUST00000033121 4257 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Chmp6P0C0A3 Cbarp-215ENSMUST00000170219 2941 ntAPPRIS P2 TSL 5 BASIC15.71■□□□□ 0.11
Chmp6P0C0A3 Esrrb-206ENSMUST00000167891 1344 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Chmp6P0C0A3 Foxs1-201ENSMUST00000099200 1311 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
Chmp6P0C0A3 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Chmp6P0C0A3 Nkx6-1-201ENSMUST00000044125 3138 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Chmp6P0C0A3 Asap1-216ENSMUST00000177083 4415 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Chmp6P0C0A3 Ccny-201ENSMUST00000053917 4017 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Chmp6P0C0A3 P4ha2-215ENSMUST00000174616 2094 ntTSL 5 BASIC15.71■□□□□ 0.11
Chmp6P0C0A3 Col5a1-201ENSMUST00000028280 8406 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Chmp6P0C0A3 Sbk2-205ENSMUST00000208109 1422 ntTSL 5 BASIC15.71■□□□□ 0.11
Chmp6P0C0A3 Emc7-201ENSMUST00000069747 5826 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Chmp6P0C0A3 Irs3-201ENSMUST00000057314 2337 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Chmp6P0C0A3 Pcgf5-211ENSMUST00000225920 6443 ntBASIC15.71■□□□□ 0.11
Chmp6P0C0A3 Kpnb1-201ENSMUST00000001479 5894 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Chmp6P0C0A3 Apip-201ENSMUST00000011055 919 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Chmp6P0C0A3 Med11-202ENSMUST00000151013 445 ntTSL 2 BASIC15.71■□□□□ 0.11
Chmp6P0C0A3 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC15.71■□□□□ 0.11
Chmp6P0C0A3 Fech-201ENSMUST00000025484 2901 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Chmp6P0C0A3 Olah-201ENSMUST00000027955 1533 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Chmp6P0C0A3 Ece2-201ENSMUST00000003898 3152 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
Chmp6P0C0A3 Tcf21-202ENSMUST00000218002 1788 ntBASIC15.71■□□□□ 0.11
Chmp6P0C0A3 Cox16-201ENSMUST00000002757 2007 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Chmp6P0C0A3 Ankrd23-202ENSMUST00000193083 2277 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Chmp6P0C0A3 Fuca1-201ENSMUST00000030434 2525 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Chmp6P0C0A3 Knop1-204ENSMUST00000106550 5524 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
Chmp6P0C0A3 Arid3a-202ENSMUST00000105376 4892 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
Chmp6P0C0A3 Ccer1-201ENSMUST00000060703 1865 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
Chmp6P0C0A3 Gm45779-201ENSMUST00000212189 4064 ntBASIC15.71■□□□□ 0.1
Chmp6P0C0A3 Col7a1-202ENSMUST00000112070 9250 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.1
Chmp6P0C0A3 Sesn3-201ENSMUST00000034507 1827 ntTSL 5 BASIC15.71■□□□□ 0.1
Chmp6P0C0A3 Camsap2-202ENSMUST00000192001 6329 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.1
Chmp6P0C0A3 Hps5-201ENSMUST00000014562 4953 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
Chmp6P0C0A3 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Chmp6P0C0A3 Ube2l6-201ENSMUST00000102642 1560 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Chmp6P0C0A3 Gm26688-201ENSMUST00000181176 1568 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Chmp6P0C0A3 Nrap-201ENSMUST00000040711 5334 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Chmp6P0C0A3 Rfx5-203ENSMUST00000107254 4450 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Chmp6P0C0A3 Mib2-201ENSMUST00000103176 3642 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Chmp6P0C0A3 Tspan15-201ENSMUST00000047883 3638 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Chmp6P0C0A3 Nt5e-201ENSMUST00000034992 3995 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Chmp6P0C0A3 Sgo2a-201ENSMUST00000027202 4939 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Chmp6P0C0A3 Acap2-201ENSMUST00000058033 6493 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Chmp6P0C0A3 Irf8-205ENSMUST00000162001 2270 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Chmp6P0C0A3 Hps1-204ENSMUST00000160455 2952 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Chmp6P0C0A3 Caprin2-201ENSMUST00000072324 2952 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
Chmp6P0C0A3 Agap1-201ENSMUST00000027521 11921 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
Chmp6P0C0A3 Mfng-201ENSMUST00000018313 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Chmp6P0C0A3 Cacna1g-209ENSMUST00000107791 8002 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
Chmp6P0C0A3 Fbxo44-202ENSMUST00000105705 1034 ntTSL 2 BASIC15.7■□□□□ 0.1
Chmp6P0C0A3 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Chmp6P0C0A3 Btf3-204ENSMUST00000134542 780 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
Chmp6P0C0A3 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC15.7■□□□□ 0.1
Chmp6P0C0A3 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC15.7■□□□□ 0.1
Chmp6P0C0A3 Rhox2a-202ENSMUST00000173650 735 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Chmp6P0C0A3 Gm18889-201ENSMUST00000174284 929 ntBASIC15.7■□□□□ 0.1
Chmp6P0C0A3 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Chmp6P0C0A3 Rhox2c-204ENSMUST00000184688 720 ntTSL 5 BASIC15.7■□□□□ 0.1
Chmp6P0C0A3 Klk2-ps-201ENSMUST00000205342 571 ntBASIC15.7■□□□□ 0.1
Chmp6P0C0A3 Cdipt-205ENSMUST00000206450 951 ntTSL 5 BASIC15.7■□□□□ 0.1
Chmp6P0C0A3 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
Chmp6P0C0A3 Pde6g-201ENSMUST00000026452 900 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 52.5 ms