Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Smpd3-202ENSMUST00000212896 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trim56Q80VI1 Mocs1-201ENSMUST00000024797 2646 ntTSL 5 BASIC17.03■□□□□ 0.32
Trim56Q80VI1 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
Trim56Q80VI1 Glyr1-202ENSMUST00000115844 3348 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trim56Q80VI1 Glyr1-201ENSMUST00000023189 3330 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Trim56Q80VI1 Sgk1-202ENSMUST00000092673 2576 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Trim56Q80VI1 Fbxl4-201ENSMUST00000039234 2546 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trim56Q80VI1 Ccnb2-201ENSMUST00000034742 1531 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trim56Q80VI1 Sdk1-202ENSMUST00000085774 10352 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trim56Q80VI1 Gm12620-201ENSMUST00000119791 1986 ntBASIC17.03■□□□□ 0.32
Trim56Q80VI1 Gm12612-201ENSMUST00000140182 1986 ntBASIC17.03■□□□□ 0.32
Trim56Q80VI1 Msmp-201ENSMUST00000107884 743 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
Trim56Q80VI1 Ppdpf-202ENSMUST00000108841 689 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trim56Q80VI1 Hist3h2bb-ps-201ENSMUST00000117558 465 ntBASIC17.03■□□□□ 0.32
Trim56Q80VI1 Mobp-207ENSMUST00000215512 498 ntTSL 2 BASIC17.03■□□□□ 0.32
Trim56Q80VI1 Slit1-203ENSMUST00000169141 5673 ntTSL 5 BASIC17.03■□□□□ 0.32
Trim56Q80VI1 Ank1-208ENSMUST00000121075 1740 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Trim56Q80VI1 Lipo3-202ENSMUST00000112508 2839 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trim56Q80VI1 Tada3-201ENSMUST00000032410 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trim56Q80VI1 1810014B01Rik-201ENSMUST00000181587 1661 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Trim56Q80VI1 Hnrnpm-201ENSMUST00000087582 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trim56Q80VI1 9330182L06Rik-202ENSMUST00000115348 3403 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trim56Q80VI1 Prok2-202ENSMUST00000032152 1423 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Trim56Q80VI1 Kbtbd11-201ENSMUST00000069399 6973 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trim56Q80VI1 Pgm2l1-202ENSMUST00000084935 8834 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trim56Q80VI1 Pdk2-201ENSMUST00000038431 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Trim56Q80VI1 Cpne6-201ENSMUST00000074225 2201 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
Trim56Q80VI1 Zdhhc23-201ENSMUST00000036321 1380 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Trim56Q80VI1 Arhgef33-202ENSMUST00000223878 3253 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
Trim56Q80VI1 Arhgef33-201ENSMUST00000068175 3260 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
Trim56Q80VI1 AC159621.2-201ENSMUST00000223519 1326 ntBASIC17.02■□□□□ 0.32
Trim56Q80VI1 Pus1-207ENSMUST00000170468 1510 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
Trim56Q80VI1 Gm45630-201ENSMUST00000210243 1911 ntBASIC17.02■□□□□ 0.32
Trim56Q80VI1 Rhobtb1-210ENSMUST00000167384 2331 ntTSL 5 BASIC17.02■□□□□ 0.32
Trim56Q80VI1 Ly9-201ENSMUST00000004827 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Trim56Q80VI1 Sez6-202ENSMUST00000093995 4239 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
Trim56Q80VI1 Ltc4s-202ENSMUST00000102772 649 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Trim56Q80VI1 Dusp14-203ENSMUST00000108101 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Trim56Q80VI1 Cryba4-202ENSMUST00000112383 754 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Trim56Q80VI1 Gm13453-201ENSMUST00000118708 357 ntBASIC17.02■□□□□ 0.32
Trim56Q80VI1 1700007J10Rik-202ENSMUST00000153431 1111 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Trim56Q80VI1 Pkig-209ENSMUST00000164399 983 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
Trim56Q80VI1 4930448I06Rik-201ENSMUST00000194002 546 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Trim56Q80VI1 Gm20949-201ENSMUST00000206478 952 ntBASIC17.02■□□□□ 0.32
Trim56Q80VI1 AC102291.3-201ENSMUST00000226566 405 ntBASIC17.02■□□□□ 0.32
Trim56Q80VI1 Hes5-201ENSMUST00000049621 1273 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Trim56Q80VI1 Ndufa8-201ENSMUST00000070112 861 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Trim56Q80VI1 Mir125a-201ENSMUST00000083545 68 ntBASIC17.02■□□□□ 0.32
Trim56Q80VI1 Ap4b1-204ENSMUST00000106824 2412 ntTSL 5 BASIC17.02■□□□□ 0.32
Trim56Q80VI1 Rnf167-201ENSMUST00000037534 1833 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Trim56Q80VI1 Elovl1-201ENSMUST00000006557 1811 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Trim56Q80VI1 Nyap1-201ENSMUST00000061789 3912 ntAPPRIS P3 TSL 5 BASIC17.02■□□□□ 0.31
Trim56Q80VI1 Cc2d1b-201ENSMUST00000030320 3303 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Trim56Q80VI1 Gcsh-201ENSMUST00000040484 1443 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Trim56Q80VI1 Met-203ENSMUST00000115443 6809 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
Trim56Q80VI1 Pou2f2-201ENSMUST00000098679 2340 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
Trim56Q80VI1 Gm45751-201ENSMUST00000210185 1573 ntBASIC17.02■□□□□ 0.31
Trim56Q80VI1 Ggn-205ENSMUST00000209019 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
Trim56Q80VI1 Adgrl1-201ENSMUST00000045393 5643 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
Trim56Q80VI1 Sema4c-201ENSMUST00000114991 3773 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Trim56Q80VI1 Acp5-201ENSMUST00000069330 1356 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Trim56Q80VI1 Tom1-202ENSMUST00000165630 2267 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trim56Q80VI1 Hnrnph2-201ENSMUST00000050331 1701 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
Trim56Q80VI1 Gm5763-201ENSMUST00000155951 1530 ntBASIC17.01■□□□□ 0.31
Trim56Q80VI1 Gm26702-201ENSMUST00000181730 4570 ntTSL 5 BASIC17.01■□□□□ 0.31
Trim56Q80VI1 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
Trim56Q80VI1 Camk2b-208ENSMUST00000109812 1875 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Trim56Q80VI1 Gm10044-201ENSMUST00000081331 1312 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Trim56Q80VI1 Zbtb7b-204ENSMUST00000107435 4333 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trim56Q80VI1 Zbtb25-204ENSMUST00000176278 1672 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trim56Q80VI1 Csnk1g2-202ENSMUST00000085435 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trim56Q80VI1 Snx29-207ENSMUST00000180792 2667 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
Trim56Q80VI1 Iffo1-202ENSMUST00000119527 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trim56Q80VI1 C530008M17Rik-205ENSMUST00000121851 1165 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Trim56Q80VI1 Mansc4-202ENSMUST00000123367 542 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
Trim56Q80VI1 Gm27306-201ENSMUST00000183970 107 ntBASIC17.01■□□□□ 0.31
Trim56Q80VI1 Gm42787-201ENSMUST00000200879 1164 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Trim56Q80VI1 5430431A17Rik-201ENSMUST00000206342 795 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Trim56Q80VI1 AC158982.1-201ENSMUST00000228377 901 ntBASIC17.01■□□□□ 0.31
Trim56Q80VI1 Irx3os-201ENSMUST00000062522 2988 ntTSL 5 BASIC17.01■□□□□ 0.31
Trim56Q80VI1 Rhox9-201ENSMUST00000089062 882 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trim56Q80VI1 Cdcp1-201ENSMUST00000039229 5310 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trim56Q80VI1 Zfp668-204ENSMUST00000106263 3132 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trim56Q80VI1 Pld3-201ENSMUST00000117095 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trim56Q80VI1 Islr2-210ENSMUST00000215950 4109 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trim56Q80VI1 Gapdh-203ENSMUST00000118875 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trim56Q80VI1 Pde3b-201ENSMUST00000032909 6573 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trim56Q80VI1 Gtf2h5-201ENSMUST00000039487 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trim56Q80VI1 Med15-201ENSMUST00000012259 3383 ntAPPRIS P4 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trim56Q80VI1 Rtf1-201ENSMUST00000028767 4664 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trim56Q80VI1 Nipal2-201ENSMUST00000040791 4331 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trim56Q80VI1 Anks1b-202ENSMUST00000099366 2549 ntTSL 5 BASIC17.01■□□□□ 0.31
Trim56Q80VI1 Keap1-205ENSMUST00000194542 3151 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trim56Q80VI1 Dhrs4-201ENSMUST00000022821 1392 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trim56Q80VI1 Megf11-210ENSMUST00000164113 6018 ntTSL 5 BASIC17.01■□□□□ 0.31
Trim56Q80VI1 Clcn3-203ENSMUST00000093490 5518 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trim56Q80VI1 Zbtb20-202ENSMUST00000114690 2759 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
Trim56Q80VI1 Ctnna2-204ENSMUST00000160894 4162 ntTSL 1 (best) BASIC17■□□□□ 0.31
Trim56Q80VI1 Fam189b-203ENSMUST00000119707 2415 ntTSL 5 BASIC17■□□□□ 0.31
Trim56Q80VI1 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 44.7 ms