Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Hmgb4Q6P8W9 Tns1-222ENSMUST00000212888 5643 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
Hmgb4Q6P8W9 Spsb1-203ENSMUST00000105685 1537 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Hmgb4Q6P8W9 Parp3-203ENSMUST00000123555 2495 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
Hmgb4Q6P8W9 Sorbs3-204ENSMUST00000227929 2460 ntBASIC15.17■□□□□ 0.02
Hmgb4Q6P8W9 Gm16845-201ENSMUST00000180419 1415 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Hmgb4Q6P8W9 Gm16565-201ENSMUST00000159138 2181 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Hmgb4Q6P8W9 Psmd13-201ENSMUST00000026560 1989 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Hmgb4Q6P8W9 Ap4b1-204ENSMUST00000106824 2412 ntTSL 5 BASIC15.16■□□□□ 0.02
Hmgb4Q6P8W9 Khdrbs1-201ENSMUST00000066257 3738 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Hmgb4Q6P8W9 Guca1b-201ENSMUST00000024774 1668 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Hmgb4Q6P8W9 Krt14-201ENSMUST00000007272 1698 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Hmgb4Q6P8W9 Hoga1-201ENSMUST00000081714 1668 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Hmgb4Q6P8W9 Spryd4-201ENSMUST00000061995 1583 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Hmgb4Q6P8W9 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
Hmgb4Q6P8W9 AC164565.1-201ENSMUST00000217520 1484 ntBASIC15.16■□□□□ 0.02
Hmgb4Q6P8W9 Nfe2l2-201ENSMUST00000102672 2475 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Hmgb4Q6P8W9 Ankrd27-202ENSMUST00000186245 1926 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Hmgb4Q6P8W9 Palm3-201ENSMUST00000055077 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Hmgb4Q6P8W9 Gm13453-201ENSMUST00000118708 357 ntBASIC15.16■□□□□ 0.02
Hmgb4Q6P8W9 Gm12264-201ENSMUST00000123949 500 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Hmgb4Q6P8W9 Gm16137-201ENSMUST00000161571 664 ntTSL 5 BASIC15.16■□□□□ 0.02
Hmgb4Q6P8W9 Gm20444-201ENSMUST00000174014 648 ntTSL 3 BASIC15.16■□□□□ 0.02
Hmgb4Q6P8W9 Gm27437-201ENSMUST00000183429 107 ntBASIC15.16■□□□□ 0.02
Hmgb4Q6P8W9 Gm18766-201ENSMUST00000189811 808 ntBASIC15.16■□□□□ 0.02
Hmgb4Q6P8W9 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC15.16■□□□□ 0.02
Hmgb4Q6P8W9 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Hmgb4Q6P8W9 Oxtr-201ENSMUST00000053306 4704 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Hmgb4Q6P8W9 Limk1-201ENSMUST00000015137 3331 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Hmgb4Q6P8W9 Fam189b-203ENSMUST00000119707 2415 ntTSL 5 BASIC15.16■□□□□ 0.02
Hmgb4Q6P8W9 Eldr-203ENSMUST00000130392 1540 ntTSL 2 BASIC15.16■□□□□ 0.02
Hmgb4Q6P8W9 Nop56-202ENSMUST00000103198 1877 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Hmgb4Q6P8W9 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Hmgb4Q6P8W9 Plekha4-201ENSMUST00000051810 2660 ntAPPRIS P2 TSL 5 BASIC15.16■□□□□ 0.02
Hmgb4Q6P8W9 Hic1-201ENSMUST00000055619 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Hmgb4Q6P8W9 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Hmgb4Q6P8W9 Tmem38a-201ENSMUST00000034244 2124 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Hmgb4Q6P8W9 Rnf146-201ENSMUST00000037548 4402 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
Hmgb4Q6P8W9 Adam11-201ENSMUST00000068150 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Hmgb4Q6P8W9 Bptf-201ENSMUST00000057892 11488 ntAPPRIS P2 TSL 5 BASIC15.16■□□□□ 0.02
Hmgb4Q6P8W9 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC15.16■□□□□ 0.02
Hmgb4Q6P8W9 Sync-201ENSMUST00000102599 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Hmgb4Q6P8W9 Zfp12-201ENSMUST00000032591 5265 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Hmgb4Q6P8W9 Plekhb1-207ENSMUST00000116287 1911 ntAPPRIS ALT1 TSL 3 BASIC15.15■□□□□ 0.02
Hmgb4Q6P8W9 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Hmgb4Q6P8W9 Kat8-201ENSMUST00000033070 1579 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Hmgb4Q6P8W9 Parm1-201ENSMUST00000040576 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Hmgb4Q6P8W9 Caprin2-201ENSMUST00000072324 2952 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
Hmgb4Q6P8W9 Nkx6-1-201ENSMUST00000044125 3138 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Hmgb4Q6P8W9 Crb2-201ENSMUST00000050372 6372 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Hmgb4Q6P8W9 Plin5-201ENSMUST00000019808 1986 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Hmgb4Q6P8W9 Ece2-201ENSMUST00000003898 3152 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Hmgb4Q6P8W9 Apip-201ENSMUST00000011055 919 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Hmgb4Q6P8W9 Clnkos-201ENSMUST00000114080 439 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Hmgb4Q6P8W9 Rpl9-202ENSMUST00000118543 1193 ntTSL 2 BASIC15.15■□□□□ 0.02
Hmgb4Q6P8W9 Gm15199-201ENSMUST00000129933 542 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Hmgb4Q6P8W9 Gm5866-201ENSMUST00000177881 973 ntBASIC15.15■□□□□ 0.02
Hmgb4Q6P8W9 Guca2b-201ENSMUST00000044426 605 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Hmgb4Q6P8W9 Rhbdl2-201ENSMUST00000053202 1217 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Hmgb4Q6P8W9 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Hmgb4Q6P8W9 Ccdc158-203ENSMUST00000150359 3353 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Hmgb4Q6P8W9 Itsn1-202ENSMUST00000064797 7418 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
Hmgb4Q6P8W9 Prrx1-202ENSMUST00000075805 4986 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Hmgb4Q6P8W9 Tspan15-201ENSMUST00000047883 3638 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Hmgb4Q6P8W9 Dpysl3-204ENSMUST00000121805 5484 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Hmgb4Q6P8W9 Siglecf-201ENSMUST00000012798 2510 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Hmgb4Q6P8W9 Gm2061-201ENSMUST00000180623 2761 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Hmgb4Q6P8W9 Txndc11-203ENSMUST00000118679 3523 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Hmgb4Q6P8W9 Cradd-201ENSMUST00000053594 1661 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Hmgb4Q6P8W9 Fbxo27-201ENSMUST00000039998 1946 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Hmgb4Q6P8W9 Gm26850-201ENSMUST00000181653 2669 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Hmgb4Q6P8W9 Frmd4b-203ENSMUST00000113355 4913 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Hmgb4Q6P8W9 Vps53-201ENSMUST00000056601 2833 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Hmgb4Q6P8W9 B3gnt7-201ENSMUST00000113306 2582 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Hmgb4Q6P8W9 Rusc1-202ENSMUST00000090929 3706 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
Hmgb4Q6P8W9 Hps1-204ENSMUST00000160455 2952 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Hmgb4Q6P8W9 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Hmgb4Q6P8W9 Prkcz-201ENSMUST00000030922 2641 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Hmgb4Q6P8W9 Fbxl19-207ENSMUST00000206893 3449 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Hmgb4Q6P8W9 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Hmgb4Q6P8W9 Pou2f3-202ENSMUST00000176636 2522 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Hmgb4Q6P8W9 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Hmgb4Q6P8W9 Gm38058-201ENSMUST00000194323 4368 ntBASIC15.14■□□□□ 0.01
Hmgb4Q6P8W9 Srcin1-202ENSMUST00000107593 3733 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Hmgb4Q6P8W9 Pola2-201ENSMUST00000025752 2424 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Hmgb4Q6P8W9 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Hmgb4Q6P8W9 Mtus2-204ENSMUST00000110514 1532 ntTSL 5 BASIC15.14■□□□□ 0.01
Hmgb4Q6P8W9 Syn2-201ENSMUST00000009538 2708 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
Hmgb4Q6P8W9 Lrwd1-201ENSMUST00000006301 2473 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Hmgb4Q6P8W9 Tcf19-203ENSMUST00000161012 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Hmgb4Q6P8W9 Cd209f-202ENSMUST00000138439 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Hmgb4Q6P8W9 Gm11682-201ENSMUST00000144689 516 ntTSL 3 BASIC15.14■□□□□ 0.01
Hmgb4Q6P8W9 Cd209f-203ENSMUST00000145007 1186 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Hmgb4Q6P8W9 Ppt2-202ENSMUST00000166040 1139 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
Hmgb4Q6P8W9 Sema6b-202ENSMUST00000167545 3847 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Hmgb4Q6P8W9 Mir8102-201ENSMUST00000184148 139 ntBASIC15.14■□□□□ 0.01
Hmgb4Q6P8W9 S100a13-201ENSMUST00000048138 715 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Hmgb4Q6P8W9 Erp29-201ENSMUST00000052590 1123 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Hmgb4Q6P8W9 Ankrd10-202ENSMUST00000169782 5156 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Hmgb4Q6P8W9 Pax7-201ENSMUST00000030508 5854 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 27.4 ms