Protein–RNA interactions for Protein: Q61321

Six4, Homeobox protein SIX4, mousemouse

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six4Q61321 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC14.59□□□□□ -0.07
Six4Q61321 Sytl1-201ENSMUST00000030674 1951 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Six4Q61321 9930104L06Rik-201ENSMUST00000094769 2911 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Six4Q61321 Nap1l1-208ENSMUST00000219961 1512 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Six4Q61321 Epb41l1-204ENSMUST00000103137 6490 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Six4Q61321 9330182L06Rik-202ENSMUST00000115348 3403 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Six4Q61321 Hps1-204ENSMUST00000160455 2952 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Six4Q61321 Celf5-203ENSMUST00000120508 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Six4Q61321 Rragb-201ENSMUST00000039720 2258 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Six4Q61321 Sgk1-202ENSMUST00000092673 2576 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Six4Q61321 F2r-201ENSMUST00000059193 3336 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Six4Q61321 Rab3a-202ENSMUST00000110090 1375 ntAPPRIS P1 TSL 3 BASIC14.59□□□□□ -0.07
Six4Q61321 F420014N23Rik-201ENSMUST00000181578 2396 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Six4Q61321 Jpt1-201ENSMUST00000021083 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Six4Q61321 Flt1-202ENSMUST00000031653 6895 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Six4Q61321 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
Six4Q61321 Ciart-202ENSMUST00000159739 1939 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Six4Q61321 Gm45630-201ENSMUST00000210243 1911 ntBASIC14.58□□□□□ -0.07
Six4Q61321 Gnpat-201ENSMUST00000034466 2984 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Six4Q61321 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Six4Q61321 Mageh1-201ENSMUST00000051484 1410 ntAPPRIS P1 BASIC14.58□□□□□ -0.07
Six4Q61321 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC14.58□□□□□ -0.07
Six4Q61321 Med15-201ENSMUST00000012259 3383 ntAPPRIS P4 TSL 1 (best) BASIC14.58□□□□□ -0.08
Six4Q61321 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Six4Q61321 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Six4Q61321 Eif4g1-206ENSMUST00000115463 5378 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Six4Q61321 H60b-201ENSMUST00000105522 1029 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Six4Q61321 Ropn1l-201ENSMUST00000110408 957 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Six4Q61321 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC14.58□□□□□ -0.08
Six4Q61321 Khdc3-202ENSMUST00000167514 1251 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
Six4Q61321 1700086L19Rik-202ENSMUST00000185822 1028 ntTSL 3 BASIC14.58□□□□□ -0.08
Six4Q61321 Gm44081-201ENSMUST00000204406 643 ntTSL 3 BASIC14.58□□□□□ -0.08
Six4Q61321 AC149588.3-201ENSMUST00000227515 150 ntBASIC14.58□□□□□ -0.08
Six4Q61321 Snrnp25-201ENSMUST00000039601 821 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Six4Q61321 Pabpn1l-201ENSMUST00000093059 1148 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Six4Q61321 Kcnab2-202ENSMUST00000105648 1576 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
Six4Q61321 Sgtb-201ENSMUST00000044385 3048 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Six4Q61321 Nyap1-201ENSMUST00000061789 3912 ntAPPRIS P3 TSL 5 BASIC14.58□□□□□ -0.08
Six4Q61321 Wdr47-201ENSMUST00000051145 4222 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Six4Q61321 Arpc4-203ENSMUST00000203578 1323 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Six4Q61321 Oxr1-206ENSMUST00000170127 4251 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Six4Q61321 Slc8b1-203ENSMUST00000111889 1624 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
Six4Q61321 Pelp1-201ENSMUST00000019065 3435 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Six4Q61321 Fam160b1-201ENSMUST00000036407 5630 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Six4Q61321 Gm4756-202ENSMUST00000208039 2344 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
Six4Q61321 Tmem184a-201ENSMUST00000044002 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Six4Q61321 Crhr2-209ENSMUST00000213026 1443 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Six4Q61321 Map2k6-201ENSMUST00000020949 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Six4Q61321 Arhgap44-201ENSMUST00000047463 4074 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Six4Q61321 Dctn1-201ENSMUST00000077407 4118 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Six4Q61321 Fam169b-206ENSMUST00000210558 2815 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
Six4Q61321 Eef1d-204ENSMUST00000089681 2152 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Six4Q61321 Knop1-205ENSMUST00000116280 5382 ntAPPRIS P3 TSL 5 BASIC14.57□□□□□ -0.08
Six4Q61321 Slc5a2-202ENSMUST00000118169 2277 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Six4Q61321 Fbxo30-202ENSMUST00000129456 5060 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Six4Q61321 Chst11-201ENSMUST00000040110 5527 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Six4Q61321 Ptprm-202ENSMUST00000223982 4802 ntAPPRIS P2 BASIC14.57□□□□□ -0.08
Six4Q61321 Metrnl-202ENSMUST00000106089 1101 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
Six4Q61321 Gm7336-201ENSMUST00000107041 1232 ntBASIC14.57□□□□□ -0.08
Six4Q61321 Dpm3-202ENSMUST00000107462 827 ntAPPRIS P1 TSL 3 BASIC14.57□□□□□ -0.08
Six4Q61321 Gm6415-201ENSMUST00000118488 348 ntBASIC14.57□□□□□ -0.08
Six4Q61321 Orai3-202ENSMUST00000118865 768 ntTSL 3 BASIC14.57□□□□□ -0.08
Six4Q61321 Btf3-204ENSMUST00000134542 780 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
Six4Q61321 Gm15706-201ENSMUST00000139612 899 ntTSL 2 BASIC14.57□□□□□ -0.08
Six4Q61321 Gm26771-201ENSMUST00000180472 1082 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Six4Q61321 1190007I07Rik-204ENSMUST00000183416 637 ntTSL 2 BASIC14.57□□□□□ -0.08
Six4Q61321 Plpp4-203ENSMUST00000205896 714 ntTSL 5 BASIC14.57□□□□□ -0.08
Six4Q61321 Mrpl27-201ENSMUST00000025278 756 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Six4Q61321 Cyhr1-201ENSMUST00000066677 1163 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Six4Q61321 Olfr160-203ENSMUST00000215727 1667 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
Six4Q61321 Ppp2r1a-201ENSMUST00000007708 2410 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Six4Q61321 Ints14-201ENSMUST00000037504 2837 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Six4Q61321 Grik2-210ENSMUST00000220263 2085 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Six4Q61321 Hacd4-201ENSMUST00000030221 2089 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Six4Q61321 AC154767.3-201ENSMUST00000225150 1342 ntBASIC14.57□□□□□ -0.08
Six4Q61321 Dym-201ENSMUST00000039608 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Six4Q61321 Acss3-201ENSMUST00000044668 2494 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Six4Q61321 2610028D06Rik-201ENSMUST00000215216 1713 ntBASIC14.57□□□□□ -0.08
Six4Q61321 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Six4Q61321 Tmc8-202ENSMUST00000106334 2644 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Six4Q61321 Efhd1-201ENSMUST00000027472 1854 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Six4Q61321 Jakmip1-212ENSMUST00000174629 1941 ntTSL 5 BASIC14.56□□□□□ -0.08
Six4Q61321 Acr-201ENSMUST00000023295 1504 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Six4Q61321 9130017K11Rik-202ENSMUST00000135670 3338 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Six4Q61321 Plekha1-201ENSMUST00000048180 3321 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Six4Q61321 Furin-203ENSMUST00000122232 4286 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Six4Q61321 Pcyox1l-201ENSMUST00000025472 2017 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Six4Q61321 Pcdha3-201ENSMUST00000192503 5332 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Six4Q61321 Ap4b1-202ENSMUST00000076599 2692 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Six4Q61321 Chtf18-201ENSMUST00000048054 3214 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Six4Q61321 Cers5-202ENSMUST00000109035 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Six4Q61321 Olfr317-202ENSMUST00000215513 2769 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
Six4Q61321 Itm2b-201ENSMUST00000022704 1796 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Six4Q61321 Gm15693-201ENSMUST00000120470 637 ntBASIC14.56□□□□□ -0.08
Six4Q61321 Gm13616-201ENSMUST00000120600 222 ntBASIC14.56□□□□□ -0.08
Six4Q61321 Gm6222-201ENSMUST00000120787 396 ntBASIC14.56□□□□□ -0.08
Six4Q61321 Hras-203ENSMUST00000124314 1073 ntTSL 5 BASIC14.56□□□□□ -0.08
Six4Q61321 Gm15701-201ENSMUST00000129559 573 ntTSL 3 BASIC14.56□□□□□ -0.08
Six4Q61321 Abhd11os-201ENSMUST00000136022 604 ntTSL 2 BASIC14.56□□□□□ -0.08
Six4Q61321 1810032O08Rik-206ENSMUST00000144049 966 ntAPPRIS P5 TSL 2 BASIC14.56□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 50.3 ms