Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Ccdc157-202ENSMUST00000101626 5153 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
Trim3Q9R1R2 Ghdc-201ENSMUST00000017891 2462 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Trim3Q9R1R2 Ifna12-201ENSMUST00000102806 797 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
Trim3Q9R1R2 Gm16198-201ENSMUST00000118766 670 ntBASIC13.65□□□□□ -0.22
Trim3Q9R1R2 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC13.65□□□□□ -0.22
Trim3Q9R1R2 Gm20481-201ENSMUST00000173680 564 ntAPPRIS P1 TSL 3 BASIC13.65□□□□□ -0.22
Trim3Q9R1R2 1700021A07Rik-203ENSMUST00000188024 404 ntTSL 3 BASIC13.65□□□□□ -0.22
Trim3Q9R1R2 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC13.65□□□□□ -0.22
Trim3Q9R1R2 Mxra8os-201ENSMUST00000097740 687 ntBASIC13.65□□□□□ -0.22
Trim3Q9R1R2 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
Trim3Q9R1R2 Nyap1-201ENSMUST00000061789 3912 ntAPPRIS P3 TSL 5 BASIC13.65□□□□□ -0.22
Trim3Q9R1R2 Gm5648-201ENSMUST00000122244 1587 ntBASIC13.65□□□□□ -0.22
Trim3Q9R1R2 Acbd5-215ENSMUST00000228050 4804 ntAPPRIS ALT2 BASIC13.65□□□□□ -0.22
Trim3Q9R1R2 Fndc7-201ENSMUST00000053065 3009 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Trim3Q9R1R2 Edn3-201ENSMUST00000029030 3117 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Trim3Q9R1R2 4930402H24Rik-202ENSMUST00000110243 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Trim3Q9R1R2 Gm3373-202ENSMUST00000177556 1955 ntAPPRIS P5 TSL 5 BASIC13.65□□□□□ -0.22
Trim3Q9R1R2 Gm3500-201ENSMUST00000177986 1955 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
Trim3Q9R1R2 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Trim3Q9R1R2 Taok2-201ENSMUST00000071268 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Trim3Q9R1R2 Ece2-201ENSMUST00000003898 3152 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.23
Trim3Q9R1R2 Ccdc117-201ENSMUST00000020776 3372 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.23
Trim3Q9R1R2 1500011B03Rik-202ENSMUST00000112160 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Trim3Q9R1R2 1700022A21Rik-202ENSMUST00000182910 1448 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Trim3Q9R1R2 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
Trim3Q9R1R2 Fhdc1-205ENSMUST00000194027 1648 ntTSL 5 BASIC13.64□□□□□ -0.23
Trim3Q9R1R2 Parp16-205ENSMUST00000216702 1643 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Trim3Q9R1R2 Nek7-202ENSMUST00000186017 5258 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Trim3Q9R1R2 Fbxo27-202ENSMUST00000108280 2031 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Trim3Q9R1R2 Rxrb-202ENSMUST00000116612 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Trim3Q9R1R2 Pitx2-203ENSMUST00000106382 1757 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Trim3Q9R1R2 Inha-201ENSMUST00000037330 1475 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Trim3Q9R1R2 Fam103a1-202ENSMUST00000118190 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Trim3Q9R1R2 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
Trim3Q9R1R2 Gm23935-201ENSMUST00000102303 57 ntBASIC13.64□□□□□ -0.23
Trim3Q9R1R2 Gm24270-201ENSMUST00000102326 57 ntBASIC13.64□□□□□ -0.23
Trim3Q9R1R2 Asphd1-202ENSMUST00000106339 518 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
Trim3Q9R1R2 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Trim3Q9R1R2 Nudt1-204ENSMUST00000110826 606 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Trim3Q9R1R2 Gm24245-201ENSMUST00000157318 57 ntBASIC13.64□□□□□ -0.23
Trim3Q9R1R2 Abhd18-207ENSMUST00000203892 1021 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Trim3Q9R1R2 Kctd3-201ENSMUST00000085678 3706 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Trim3Q9R1R2 Tpbg-202ENSMUST00000098500 3481 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Trim3Q9R1R2 Polr3d-202ENSMUST00000180358 2032 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Trim3Q9R1R2 Ano7-201ENSMUST00000058682 2963 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Trim3Q9R1R2 Plekha4-201ENSMUST00000051810 2660 ntAPPRIS P2 TSL 5 BASIC13.64□□□□□ -0.23
Trim3Q9R1R2 Eef1e1-201ENSMUST00000001757 2553 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Trim3Q9R1R2 Kif7-203ENSMUST00000183846 4577 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
Trim3Q9R1R2 Pex12-202ENSMUST00000108146 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Trim3Q9R1R2 Zfp868-202ENSMUST00000121886 2259 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Trim3Q9R1R2 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC13.64□□□□□ -0.23
Trim3Q9R1R2 Rspry1-207ENSMUST00000212729 2800 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Trim3Q9R1R2 S100pbp-204ENSMUST00000106061 4426 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Trim3Q9R1R2 Slc33a1-202ENSMUST00000160883 1978 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
Trim3Q9R1R2 Lgi3-201ENSMUST00000047331 3174 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Trim3Q9R1R2 Gnpat-201ENSMUST00000034466 2984 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Trim3Q9R1R2 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Trim3Q9R1R2 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Trim3Q9R1R2 Mcf2l-207ENSMUST00000110876 5253 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Trim3Q9R1R2 Nkx6-1-201ENSMUST00000044125 3138 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Trim3Q9R1R2 Itpk1-201ENSMUST00000046518 2918 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Trim3Q9R1R2 Gm37297-201ENSMUST00000192974 2384 ntBASIC13.63□□□□□ -0.23
Trim3Q9R1R2 Nosip-202ENSMUST00000107829 972 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Trim3Q9R1R2 Gdap1l1-203ENSMUST00000109421 1206 ntAPPRIS ALT1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Trim3Q9R1R2 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Trim3Q9R1R2 Cldn25-ps-201ENSMUST00000197641 693 ntBASIC13.63□□□□□ -0.23
Trim3Q9R1R2 Gm15406-202ENSMUST00000202229 767 ntTSL 2 BASIC13.63□□□□□ -0.23
Trim3Q9R1R2 Pold4-201ENSMUST00000025773 910 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Trim3Q9R1R2 Foxo4-201ENSMUST00000062000 3162 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Trim3Q9R1R2 Ccnf-201ENSMUST00000115390 3099 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Trim3Q9R1R2 Map2k7-202ENSMUST00000062686 3525 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Trim3Q9R1R2 Bmper-201ENSMUST00000071982 3791 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Trim3Q9R1R2 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC13.63□□□□□ -0.23
Trim3Q9R1R2 Sf3a1-201ENSMUST00000002198 4920 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Trim3Q9R1R2 Ccer1-201ENSMUST00000060703 1865 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
Trim3Q9R1R2 Rnf4-207ENSMUST00000182709 3046 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Trim3Q9R1R2 Depdc1b-201ENSMUST00000051594 2563 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Trim3Q9R1R2 Spon2-201ENSMUST00000046186 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Trim3Q9R1R2 Rara-203ENSMUST00000107474 2380 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
Trim3Q9R1R2 Pcnx3-201ENSMUST00000068169 5276 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Trim3Q9R1R2 Gatsl3-201ENSMUST00000020699 1574 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Trim3Q9R1R2 Akap17b-201ENSMUST00000051906 6003 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Trim3Q9R1R2 Ghr-201ENSMUST00000069451 4175 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Trim3Q9R1R2 Actg1-204ENSMUST00000106215 1827 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Trim3Q9R1R2 Grm7-201ENSMUST00000071076 3127 ntAPPRIS ALT1 TSL 5 BASIC13.62□□□□□ -0.23
Trim3Q9R1R2 Rnf11-201ENSMUST00000030284 4061 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Trim3Q9R1R2 Srgn-204ENSMUST00000160987 1727 ntAPPRIS P1 TSL 3 BASIC13.62□□□□□ -0.23
Trim3Q9R1R2 Tap2-201ENSMUST00000025197 3442 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Trim3Q9R1R2 Idh3b-201ENSMUST00000028892 1616 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Trim3Q9R1R2 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC13.62□□□□□ -0.23
Trim3Q9R1R2 Gm29202-201ENSMUST00000191263 422 ntTSL 5 BASIC13.62□□□□□ -0.23
Trim3Q9R1R2 Gm43397-201ENSMUST00000196422 481 ntTSL 3 BASIC13.62□□□□□ -0.23
Trim3Q9R1R2 AC151286.1-201ENSMUST00000198489 145 ntBASIC13.62□□□□□ -0.23
Trim3Q9R1R2 Fam71e1-204ENSMUST00000205422 366 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Trim3Q9R1R2 Zfyve21-206ENSMUST00000222843 705 ntTSL 3 BASIC13.62□□□□□ -0.23
Trim3Q9R1R2 CT010506.4-201ENSMUST00000225457 351 ntBASIC13.62□□□□□ -0.23
Trim3Q9R1R2 Acat3-201ENSMUST00000043923 2123 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Trim3Q9R1R2 C1qa-201ENSMUST00000046285 1040 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Trim3Q9R1R2 Cyp2d40-201ENSMUST00000055721 1161 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Trim3Q9R1R2 Acaa2-201ENSMUST00000041053 1515 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 38.5 ms