Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Vps28Q9D1C8 Gm26534-201ENSMUST00000181687 1724 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Vps28Q9D1C8 Hpse-201ENSMUST00000045617 3117 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Vps28Q9D1C8 Bbx-204ENSMUST00000114477 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Vps28Q9D1C8 Iqcj-201ENSMUST00000063263 1579 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Vps28Q9D1C8 Zswim8-204ENSMUST00000223840 5674 ntAPPRIS ALT2 BASIC14.86□□□□□ -0.03
Vps28Q9D1C8 Mageh1-201ENSMUST00000051484 1410 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
Vps28Q9D1C8 Gm6756-201ENSMUST00000180647 1620 ntBASIC14.86□□□□□ -0.03
Vps28Q9D1C8 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Vps28Q9D1C8 Gm15920-201ENSMUST00000118998 402 ntBASIC14.86□□□□□ -0.03
Vps28Q9D1C8 Zfp715-201ENSMUST00000012796 907 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Vps28Q9D1C8 Gm13883-202ENSMUST00000151310 1156 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Vps28Q9D1C8 4933421O10Rik-201ENSMUST00000155691 3847 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Vps28Q9D1C8 Ly6g6e-204ENSMUST00000172959 501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Vps28Q9D1C8 Mir6956-201ENSMUST00000183598 62 ntBASIC14.86□□□□□ -0.03
Vps28Q9D1C8 Commd9-201ENSMUST00000028584 1191 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Vps28Q9D1C8 Gm5089-201ENSMUST00000081580 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Vps28Q9D1C8 Kif11-201ENSMUST00000012587 4819 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Vps28Q9D1C8 Qsox1-207ENSMUST00000194632 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Vps28Q9D1C8 Mettl2-201ENSMUST00000021030 1867 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Vps28Q9D1C8 Ccer1-201ENSMUST00000060703 1865 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
Vps28Q9D1C8 4930513N10Rik-203ENSMUST00000145562 2803 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Vps28Q9D1C8 Mtmr7-202ENSMUST00000048898 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Vps28Q9D1C8 Robo4-205ENSMUST00000214185 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Vps28Q9D1C8 Ubap1l-201ENSMUST00000147185 1380 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
Vps28Q9D1C8 Cyp2t4-201ENSMUST00000108385 1599 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
Vps28Q9D1C8 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Vps28Q9D1C8 Cdcp2-202ENSMUST00000221740 1623 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
Vps28Q9D1C8 6530402F18Rik-203ENSMUST00000155949 4301 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Vps28Q9D1C8 Mfsd6l-201ENSMUST00000053211 2060 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
Vps28Q9D1C8 Gpc6-201ENSMUST00000078849 1668 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
Vps28Q9D1C8 Tbc1d30-201ENSMUST00000064107 5695 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Vps28Q9D1C8 Rpl37rt-201ENSMUST00000100847 682 ntTSL 3 BASIC14.85□□□□□ -0.03
Vps28Q9D1C8 Hist1h3e-201ENSMUST00000105107 836 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
Vps28Q9D1C8 Abhd11os-201ENSMUST00000136022 604 ntTSL 2 BASIC14.85□□□□□ -0.03
Vps28Q9D1C8 Gm25925-201ENSMUST00000158314 306 ntBASIC14.85□□□□□ -0.03
Vps28Q9D1C8 Gm8116-201ENSMUST00000182917 1201 ntBASIC14.85□□□□□ -0.03
Vps28Q9D1C8 Gm27430-201ENSMUST00000184585 107 ntBASIC14.85□□□□□ -0.03
Vps28Q9D1C8 Gm44333-201ENSMUST00000197168 107 ntBASIC14.85□□□□□ -0.03
Vps28Q9D1C8 4930500L23Rik-201ENSMUST00000198000 747 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Vps28Q9D1C8 Gm18049-201ENSMUST00000208909 581 ntBASIC14.85□□□□□ -0.03
Vps28Q9D1C8 AC158804.1-201ENSMUST00000219046 541 ntTSL 3 BASIC14.85□□□□□ -0.03
Vps28Q9D1C8 AC124732.2-201ENSMUST00000221977 316 ntBASIC14.85□□□□□ -0.03
Vps28Q9D1C8 Gdpd3-201ENSMUST00000032944 1148 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Vps28Q9D1C8 Cul7-201ENSMUST00000043464 5530 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Vps28Q9D1C8 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Vps28Q9D1C8 Kif17-201ENSMUST00000030539 3453 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
Vps28Q9D1C8 Lpcat2-201ENSMUST00000046290 2811 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Vps28Q9D1C8 Elfn2-201ENSMUST00000088592 4846 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Vps28Q9D1C8 Wwp2-205ENSMUST00000212543 1996 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Vps28Q9D1C8 Clcnka-201ENSMUST00000042617 2428 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Vps28Q9D1C8 Mast3-201ENSMUST00000166004 5305 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
Vps28Q9D1C8 Rgs6-203ENSMUST00000185665 2201 ntAPPRIS P4 TSL 5 BASIC14.85□□□□□ -0.03
Vps28Q9D1C8 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Vps28Q9D1C8 Ccdc117-201ENSMUST00000020776 3372 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Vps28Q9D1C8 Erbb2-201ENSMUST00000058295 5012 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Vps28Q9D1C8 Wbscr25-202ENSMUST00000148729 2075 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Vps28Q9D1C8 Cacnb4-201ENSMUST00000078324 8225 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Vps28Q9D1C8 Raf1-201ENSMUST00000000451 3070 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Vps28Q9D1C8 Bst1-201ENSMUST00000101237 2856 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Vps28Q9D1C8 Espn-220ENSMUST00000207676 4618 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
Vps28Q9D1C8 Pld3-202ENSMUST00000117611 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Vps28Q9D1C8 Zufsp-205ENSMUST00000218880 2005 ntTSL 5 BASIC14.84□□□□□ -0.03
Vps28Q9D1C8 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Vps28Q9D1C8 Ccnh-202ENSMUST00000163600 1055 ntTSL 5 BASIC14.84□□□□□ -0.03
Vps28Q9D1C8 Gm22175-201ENSMUST00000175007 78 ntBASIC14.84□□□□□ -0.03
Vps28Q9D1C8 Tmem86b-204ENSMUST00000206610 522 ntTSL 3 BASIC14.84□□□□□ -0.03
Vps28Q9D1C8 Klk1-201ENSMUST00000075162 954 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Vps28Q9D1C8 G430095P16Rik-201ENSMUST00000098571 721 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Vps28Q9D1C8 St8sia2-201ENSMUST00000026896 5368 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Vps28Q9D1C8 Dnm1-217ENSMUST00000202578 2820 ntAPPRIS P2 TSL 5 BASIC14.84□□□□□ -0.03
Vps28Q9D1C8 Plxdc2-203ENSMUST00000114703 2061 ntTSL 5 BASIC14.84□□□□□ -0.03
Vps28Q9D1C8 Gpx3-201ENSMUST00000082430 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Vps28Q9D1C8 Klhl11-201ENSMUST00000056665 2393 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Vps28Q9D1C8 Vsig10-202ENSMUST00000111967 4236 ntAPPRIS P2 TSL 5 BASIC14.84□□□□□ -0.03
Vps28Q9D1C8 Renbp-201ENSMUST00000114379 1318 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Vps28Q9D1C8 Cct6b-202ENSMUST00000100722 1871 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Vps28Q9D1C8 Cyp27a1-201ENSMUST00000027356 1892 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Vps28Q9D1C8 Gm28496-202ENSMUST00000137742 2752 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Vps28Q9D1C8 Entpd5-204ENSMUST00000117286 1691 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Vps28Q9D1C8 Dpp7-201ENSMUST00000028332 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Vps28Q9D1C8 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Vps28Q9D1C8 Dusp13-201ENSMUST00000075040 1745 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.03
Vps28Q9D1C8 Tchp-201ENSMUST00000094441 2882 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Vps28Q9D1C8 Irs3-201ENSMUST00000057314 2337 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.03
Vps28Q9D1C8 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.03
Vps28Q9D1C8 Syde2-204ENSMUST00000212479 3810 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.03
Vps28Q9D1C8 4930438A08Rik-201ENSMUST00000108834 2093 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.03
Vps28Q9D1C8 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
Vps28Q9D1C8 Myh14-201ENSMUST00000048102 6457 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Vps28Q9D1C8 Gli1-201ENSMUST00000026474 4057 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Vps28Q9D1C8 Kcnma1-228ENSMUST00000224468 3753 ntAPPRIS ALT2 BASIC14.83□□□□□ -0.04
Vps28Q9D1C8 Wdr38-202ENSMUST00000112872 1194 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Vps28Q9D1C8 Nespas-202ENSMUST00000150276 1262 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Vps28Q9D1C8 2310001H17Rik-206ENSMUST00000205051 676 ntTSL 3 BASIC14.83□□□□□ -0.04
Vps28Q9D1C8 Gm44872-201ENSMUST00000207864 420 ntBASIC14.83□□□□□ -0.04
Vps28Q9D1C8 Gm9182-201ENSMUST00000217829 639 ntBASIC14.83□□□□□ -0.04
Vps28Q9D1C8 Gm32351-201ENSMUST00000220503 438 ntTSL 5 BASIC14.83□□□□□ -0.04
Vps28Q9D1C8 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Vps28Q9D1C8 Rtl8c-201ENSMUST00000063384 401 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 35.5 ms