Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Clec2h-201ENSMUST00000032518 2160 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ushbp1Q8R370 Alox5-201ENSMUST00000026795 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ushbp1Q8R370 Gm4756-202ENSMUST00000208039 2344 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
Ushbp1Q8R370 Gm4081-201ENSMUST00000195287 1838 ntBASIC16.24■□□□□ 0.19
Ushbp1Q8R370 Sox1ot-202ENSMUST00000186174 7420 ntTSL 5 BASIC16.24■□□□□ 0.19
Ushbp1Q8R370 Cdk6-201ENSMUST00000042410 2470 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ushbp1Q8R370 Chd3-201ENSMUST00000092971 6066 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
Ushbp1Q8R370 Rasgef1c-202ENSMUST00000093141 2120 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Ushbp1Q8R370 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Ushbp1Q8R370 B4galt3-202ENSMUST00000111313 2098 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ushbp1Q8R370 Trbc1-201ENSMUST00000103291 512 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
Ushbp1Q8R370 Trbc2-201ENSMUST00000103299 692 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
Ushbp1Q8R370 Apip-201ENSMUST00000011055 919 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ushbp1Q8R370 Diablo-202ENSMUST00000111586 719 ntTSL 5 BASIC16.24■□□□□ 0.19
Ushbp1Q8R370 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC16.24■□□□□ 0.19
Ushbp1Q8R370 Gm11724-201ENSMUST00000125577 472 ntTSL 2 BASIC16.24■□□□□ 0.19
Ushbp1Q8R370 Vdac2-209ENSMUST00000173456 956 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
Ushbp1Q8R370 Smco4-202ENSMUST00000178999 820 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ushbp1Q8R370 Gm17399-201ENSMUST00000181824 1181 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Ushbp1Q8R370 Mir6977-201ENSMUST00000184960 64 ntBASIC16.24■□□□□ 0.19
Ushbp1Q8R370 Gm10253-201ENSMUST00000194270 940 ntBASIC16.24■□□□□ 0.19
Ushbp1Q8R370 Gm42560-201ENSMUST00000201216 1023 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Ushbp1Q8R370 AC159635.2-201ENSMUST00000223092 817 ntTSL 5 BASIC16.24■□□□□ 0.19
Ushbp1Q8R370 AC126408.1-201ENSMUST00000225184 523 ntBASIC16.24■□□□□ 0.19
Ushbp1Q8R370 Diablo-201ENSMUST00000031385 681 ntTSL 2 BASIC16.24■□□□□ 0.19
Ushbp1Q8R370 Vps25-202ENSMUST00000042477 1106 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ushbp1Q8R370 Smco4-201ENSMUST00000045620 954 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ushbp1Q8R370 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ushbp1Q8R370 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC16.24■□□□□ 0.19
Ushbp1Q8R370 Srpx-203ENSMUST00000115544 1865 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ushbp1Q8R370 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ushbp1Q8R370 Tmem184a-201ENSMUST00000044002 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ushbp1Q8R370 Dnm1-204ENSMUST00000113352 4605 ntAPPRIS ALT1 TSL 2 BASIC16.24■□□□□ 0.19
Ushbp1Q8R370 Itpk1-201ENSMUST00000046518 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ushbp1Q8R370 Gstm7-201ENSMUST00000004137 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ushbp1Q8R370 Gm14451-201ENSMUST00000121581 1542 ntBASIC16.24■□□□□ 0.19
Ushbp1Q8R370 Gm43205-201ENSMUST00000198622 1968 ntBASIC16.24■□□□□ 0.19
Ushbp1Q8R370 Pth2r-201ENSMUST00000027083 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ushbp1Q8R370 Camk2d-204ENSMUST00000106400 2722 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ushbp1Q8R370 Fam167a-201ENSMUST00000121288 4231 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ushbp1Q8R370 Slc20a2-201ENSMUST00000067786 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Ushbp1Q8R370 Lat2-201ENSMUST00000036362 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Ushbp1Q8R370 Kdm4b-202ENSMUST00000086835 4360 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
Ushbp1Q8R370 A530083I20Rik-203ENSMUST00000214426 1855 ntTSL 5 BASIC16.23■□□□□ 0.19
Ushbp1Q8R370 Trim63-201ENSMUST00000030638 1855 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
Ushbp1Q8R370 Tex44-201ENSMUST00000046004 1724 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
Ushbp1Q8R370 Kmt5b-208ENSMUST00000113977 6002 ntAPPRIS P3 TSL 5 BASIC16.23■□□□□ 0.19
Ushbp1Q8R370 Gm43697-201ENSMUST00000199637 2581 ntBASIC16.23■□□□□ 0.19
Ushbp1Q8R370 Qsox1-207ENSMUST00000194632 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Ushbp1Q8R370 Romo1-203ENSMUST00000109598 362 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
Ushbp1Q8R370 Zfp637-202ENSMUST00000112859 421 ntTSL 2 BASIC16.23■□□□□ 0.19
Ushbp1Q8R370 Abhd11os-201ENSMUST00000136022 604 ntTSL 2 BASIC16.23■□□□□ 0.19
Ushbp1Q8R370 Mecp2-204ENSMUST00000140399 1168 ntTSL 5 BASIC16.23■□□□□ 0.19
Ushbp1Q8R370 9330020H09Rik-201ENSMUST00000163781 2147 ntTSL 2 BASIC16.23■□□□□ 0.19
Ushbp1Q8R370 Gm20509-201ENSMUST00000174203 1016 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
Ushbp1Q8R370 Gm24158-201ENSMUST00000175263 71 ntBASIC16.23■□□□□ 0.19
Ushbp1Q8R370 Ociad1-210ENSMUST00000202250 800 ntTSL 2 BASIC16.23■□□□□ 0.19
Ushbp1Q8R370 Idh2-207ENSMUST00000206714 392 ntTSL 3 BASIC16.23■□□□□ 0.19
Ushbp1Q8R370 Cplx3-202ENSMUST00000215487 594 ntTSL 3 BASIC16.23■□□□□ 0.19
Ushbp1Q8R370 Arhgef33-209ENSMUST00000225223 714 ntBASIC16.23■□□□□ 0.19
Ushbp1Q8R370 Lce3e-201ENSMUST00000098886 607 ntAPPRIS P1 TSL 3 BASIC16.23■□□□□ 0.19
Ushbp1Q8R370 Wwp2-205ENSMUST00000212543 1996 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Ushbp1Q8R370 Stra8-201ENSMUST00000031876 1803 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Ushbp1Q8R370 Flrt2-202ENSMUST00000110117 3223 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Ushbp1Q8R370 Gm17396-201ENSMUST00000172075 1655 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Ushbp1Q8R370 Slc39a11-201ENSMUST00000042657 2781 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
Ushbp1Q8R370 Gm42893-201ENSMUST00000198035 1502 ntTSL 3 BASIC16.23■□□□□ 0.19
Ushbp1Q8R370 Gm20482-201ENSMUST00000172746 1644 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Ushbp1Q8R370 Lims2-201ENSMUST00000025254 1870 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Rragb-201ENSMUST00000039720 2258 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Nrcam-202ENSMUST00000110748 6275 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Skor1-202ENSMUST00000116613 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Drd5-201ENSMUST00000041646 3152 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Anks1b-213ENSMUST00000182284 2607 ntTSL 5 BASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Fdft1-204ENSMUST00000224625 3698 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Lurap1-201ENSMUST00000030469 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Gm13233-201ENSMUST00000118760 1443 ntBASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Gm13244-201ENSMUST00000118855 1446 ntBASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Dnajc7-201ENSMUST00000014339 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Prkab2-201ENSMUST00000045743 5006 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Efr3b-201ENSMUST00000111178 6547 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Gm22065-201ENSMUST00000103753 110 ntBASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Gm22066-201ENSMUST00000103761 110 ntBASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Gm24932-201ENSMUST00000103763 110 ntBASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Gm24115-201ENSMUST00000103799 110 ntBASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Gm22190-201ENSMUST00000103827 110 ntBASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Gm22191-201ENSMUST00000103831 110 ntBASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Gm24721-201ENSMUST00000103849 110 ntBASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Gm28018-201ENSMUST00000103869 110 ntBASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Gm26399-201ENSMUST00000103937 110 ntBASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Haghl-203ENSMUST00000133071 1128 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Gm25349-201ENSMUST00000177728 110 ntBASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Gm23616-201ENSMUST00000177797 110 ntBASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Gm25871-201ENSMUST00000177816 110 ntBASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Gm24752-201ENSMUST00000178240 110 ntBASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Gm24496-201ENSMUST00000178287 110 ntBASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Gm25649-201ENSMUST00000178476 110 ntBASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Gm25548-201ENSMUST00000178681 110 ntBASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Gm23147-201ENSMUST00000178841 110 ntBASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Gm26095-201ENSMUST00000179270 110 ntBASIC16.22■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 88.5 ms