Protein–RNA interactions for Protein: Q3V0C5

Usp48, Ubiquitin carboxyl-terminal hydrolase 48, mousemouse

Predictions only

Length 1,052 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp48Q3V0C5 Sybu-203ENSMUST00000110269 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Usp48Q3V0C5 Syk-203ENSMUST00000120135 5363 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Usp48Q3V0C5 Gm45133-201ENSMUST00000207548 2773 ntBASIC17.93■□□□□ 0.46
Usp48Q3V0C5 Ambra1-205ENSMUST00000111317 4929 ntTSL 5 BASIC17.93■□□□□ 0.46
Usp48Q3V0C5 Pcbp3-201ENSMUST00000001148 2013 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
Usp48Q3V0C5 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Usp48Q3V0C5 Atp2c2-201ENSMUST00000095171 3222 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Usp48Q3V0C5 Gemin5-202ENSMUST00000102711 4919 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
Usp48Q3V0C5 Smtnl2-202ENSMUST00000108500 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Usp48Q3V0C5 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Usp48Q3V0C5 Diras2-201ENSMUST00000057442 4786 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Usp48Q3V0C5 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC17.92■□□□□ 0.46
Usp48Q3V0C5 Tmem176b-203ENSMUST00000166247 1414 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Usp48Q3V0C5 Aurkc-204ENSMUST00000208049 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Usp48Q3V0C5 Snai1-201ENSMUST00000052631 1621 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Usp48Q3V0C5 Psmc3-202ENSMUST00000067663 1636 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Usp48Q3V0C5 Rnf38-202ENSMUST00000098098 5061 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Usp48Q3V0C5 Gm24543-201ENSMUST00000103867 82 ntBASIC17.92■□□□□ 0.46
Usp48Q3V0C5 Fcnb-202ENSMUST00000117486 873 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Usp48Q3V0C5 Gm15824-201ENSMUST00000119516 955 ntBASIC17.92■□□□□ 0.46
Usp48Q3V0C5 1600025M17Rik-202ENSMUST00000151426 547 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Usp48Q3V0C5 Gas5-210ENSMUST00000159706 557 ntTSL 2 BASIC17.92■□□□□ 0.46
Usp48Q3V0C5 Lrcol1-202ENSMUST00000185691 764 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Usp48Q3V0C5 2900022M07Rik-201ENSMUST00000193912 1017 ntBASIC17.92■□□□□ 0.46
Usp48Q3V0C5 4933405L10Rik-202ENSMUST00000211852 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Usp48Q3V0C5 Fkbp2-201ENSMUST00000070878 642 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Usp48Q3V0C5 Cacna2d3-201ENSMUST00000022567 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Usp48Q3V0C5 4930513N10Rik-203ENSMUST00000145562 2803 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Usp48Q3V0C5 Klhl12-202ENSMUST00000112232 3220 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Usp48Q3V0C5 Gm5320-201ENSMUST00000207163 1519 ntBASIC17.92■□□□□ 0.46
Usp48Q3V0C5 Wdr47-201ENSMUST00000051145 4222 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Usp48Q3V0C5 Slc33a1-203ENSMUST00000161659 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Usp48Q3V0C5 Snph-204ENSMUST00000109877 3367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Usp48Q3V0C5 Nabp1-201ENSMUST00000027279 2838 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Usp48Q3V0C5 Pptc7-202ENSMUST00000119015 2233 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Usp48Q3V0C5 Dpysl3-204ENSMUST00000121805 5484 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Usp48Q3V0C5 Gm20482-201ENSMUST00000172746 1644 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Usp48Q3V0C5 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
Usp48Q3V0C5 Stxbp1-201ENSMUST00000050000 3892 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Usp48Q3V0C5 Acss3-201ENSMUST00000044668 2494 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Usp48Q3V0C5 Cradd-201ENSMUST00000053594 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Usp48Q3V0C5 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC17.91■□□□□ 0.46
Usp48Q3V0C5 Ppp1r14d-202ENSMUST00000110820 790 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Usp48Q3V0C5 Vps29-204ENSMUST00000118830 1014 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Usp48Q3V0C5 Gm14042-201ENSMUST00000120139 833 ntBASIC17.91■□□□□ 0.46
Usp48Q3V0C5 Tnnt1-208ENSMUST00000166161 750 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
Usp48Q3V0C5 Snu13-203ENSMUST00000166578 1061 ntTSL 2 BASIC17.91■□□□□ 0.46
Usp48Q3V0C5 Gm10535-201ENSMUST00000182275 915 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Usp48Q3V0C5 Gm43630-201ENSMUST00000201550 776 ntBASIC17.91■□□□□ 0.46
Usp48Q3V0C5 Isca2-201ENSMUST00000021667 883 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Usp48Q3V0C5 Card9-202ENSMUST00000100303 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Usp48Q3V0C5 Tchh-201ENSMUST00000064257 5823 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
Usp48Q3V0C5 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Usp48Q3V0C5 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
Usp48Q3V0C5 Slc35e2-201ENSMUST00000043829 2910 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Usp48Q3V0C5 Ddx20-201ENSMUST00000090680 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Usp48Q3V0C5 Wdyhv1-201ENSMUST00000067563 1383 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Usp48Q3V0C5 Hpcal4-202ENSMUST00000106246 1627 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
Usp48Q3V0C5 2310011J03Rik-201ENSMUST00000020341 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Usp48Q3V0C5 Nup54-201ENSMUST00000038514 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Usp48Q3V0C5 Tcea1-202ENSMUST00000165720 2854 ntTSL 5 BASIC17.9■□□□□ 0.46
Usp48Q3V0C5 Phf12-201ENSMUST00000049167 4410 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Usp48Q3V0C5 Cxcr3-201ENSMUST00000056614 1731 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Usp48Q3V0C5 Mdm1-202ENSMUST00000163238 2461 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Usp48Q3V0C5 Mul1-203ENSMUST00000105815 473 ntTSL 3 BASIC17.9■□□□□ 0.46
Usp48Q3V0C5 Nmi-202ENSMUST00000112705 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Usp48Q3V0C5 Cd63-ps-201ENSMUST00000145417 875 ntBASIC17.9■□□□□ 0.46
Usp48Q3V0C5 Krtap16-3-201ENSMUST00000179707 601 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
Usp48Q3V0C5 4930592C13Rik-201ENSMUST00000196791 661 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Usp48Q3V0C5 Klk2-ps-201ENSMUST00000205342 571 ntBASIC17.9■□□□□ 0.46
Usp48Q3V0C5 Gm45195-201ENSMUST00000205597 1008 ntBASIC17.9■□□□□ 0.46
Usp48Q3V0C5 Rpsa-ps10-201ENSMUST00000057740 885 ntBASIC17.9■□□□□ 0.46
Usp48Q3V0C5 Scube2-203ENSMUST00000106729 3563 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Usp48Q3V0C5 Knop1-205ENSMUST00000116280 5382 ntAPPRIS P3 TSL 5 BASIC17.9■□□□□ 0.46
Usp48Q3V0C5 Fgfr3-203ENSMUST00000114411 4225 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
Usp48Q3V0C5 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Usp48Q3V0C5 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Usp48Q3V0C5 Chd4-201ENSMUST00000056889 6697 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Usp48Q3V0C5 Clec16a-204ENSMUST00000115824 6244 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
Usp48Q3V0C5 Clec16a-202ENSMUST00000066345 6244 ntAPPRIS P3 TSL 5 BASIC17.9■□□□□ 0.46
Usp48Q3V0C5 Tsc22d2-201ENSMUST00000099090 9799 ntAPPRIS P3 TSL 3 BASIC17.9■□□□□ 0.46
Usp48Q3V0C5 Sfta3-ps-205ENSMUST00000220379 2187 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Usp48Q3V0C5 Art3-205ENSMUST00000120193 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Usp48Q3V0C5 Zfp385a-201ENSMUST00000168828 2291 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
Usp48Q3V0C5 Adam11-201ENSMUST00000068150 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.46
Usp48Q3V0C5 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
Usp48Q3V0C5 Ano10-201ENSMUST00000042546 2653 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Usp48Q3V0C5 Gale-201ENSMUST00000102540 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Usp48Q3V0C5 Hcrt-202ENSMUST00000107360 509 ntTSL 5 BASIC17.89■□□□□ 0.45
Usp48Q3V0C5 Pisd-ps1-201ENSMUST00000119128 1115 ntBASIC17.89■□□□□ 0.45
Usp48Q3V0C5 Tmem80-205ENSMUST00000132061 667 ntAPPRIS P1 TSL 3 BASIC17.89■□□□□ 0.45
Usp48Q3V0C5 Oaz2-204ENSMUST00000136166 700 ntTSL 5 BASIC17.89■□□□□ 0.45
Usp48Q3V0C5 Gm6266-201ENSMUST00000203844 806 ntBASIC17.89■□□□□ 0.45
Usp48Q3V0C5 Smim8-201ENSMUST00000029972 786 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Usp48Q3V0C5 Crybb2-201ENSMUST00000031295 724 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Usp48Q3V0C5 Srd5a2-201ENSMUST00000043458 854 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Usp48Q3V0C5 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Usp48Q3V0C5 Gm37728-201ENSMUST00000195025 2292 ntBASIC17.89■□□□□ 0.45
Usp48Q3V0C5 Idh3b-201ENSMUST00000028892 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Usp48Q3V0C5 Zfp90-201ENSMUST00000034382 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 24.5 ms