Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Mmp14-206ENSMUST00000225641 3238 ntBASIC13.61□□□□□ -0.23
Trim40Q3UWA4 Papd5-201ENSMUST00000066748 4489 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Trim40Q3UWA4 Gata2-202ENSMUST00000170089 3135 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim40Q3UWA4 Arhgap40-203ENSMUST00000165398 2028 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
Trim40Q3UWA4 Ash2l-204ENSMUST00000110610 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim40Q3UWA4 Fbxl5-207ENSMUST00000124610 2306 ntTSL 5 BASIC13.61□□□□□ -0.23
Trim40Q3UWA4 Celf4-203ENSMUST00000223704 2492 ntAPPRIS ALT1 BASIC13.61□□□□□ -0.23
Trim40Q3UWA4 Myl12a-206ENSMUST00000148960 1937 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Trim40Q3UWA4 Nfasc-201ENSMUST00000043189 5072 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Trim40Q3UWA4 Rgs6-203ENSMUST00000185665 2201 ntAPPRIS P4 TSL 5 BASIC13.6□□□□□ -0.23
Trim40Q3UWA4 Pde8a-201ENSMUST00000026672 3802 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Trim40Q3UWA4 Nsd3-211ENSMUST00000155861 2834 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Trim40Q3UWA4 Msh2-201ENSMUST00000024967 3283 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Trim40Q3UWA4 Cacna1g-207ENSMUST00000107789 8383 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
Trim40Q3UWA4 Bcl11b-201ENSMUST00000066060 8111 ntAPPRIS P4 TSL 1 (best) BASIC13.6□□□□□ -0.23
Trim40Q3UWA4 Pax6-201ENSMUST00000090391 2869 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
Trim40Q3UWA4 Slc22a18-202ENSMUST00000105917 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Trim40Q3UWA4 Disp2-204ENSMUST00000110846 1732 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Trim40Q3UWA4 Zfp385b-203ENSMUST00000111830 2642 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Trim40Q3UWA4 Rasgrp2-205ENSMUST00000113471 535 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Trim40Q3UWA4 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Trim40Q3UWA4 Gm11453-201ENSMUST00000117318 1007 ntBASIC13.6□□□□□ -0.23
Trim40Q3UWA4 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Trim40Q3UWA4 Smc6-208ENSMUST00000218866 3373 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Trim40Q3UWA4 Actr1b-201ENSMUST00000043951 3248 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Trim40Q3UWA4 Ska1-201ENSMUST00000040188 2669 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Trim40Q3UWA4 Mllt11-201ENSMUST00000065482 1923 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Trim40Q3UWA4 Itpripl1-203ENSMUST00000154021 1753 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Trim40Q3UWA4 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Trim40Q3UWA4 Renbp-201ENSMUST00000114379 1318 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Trim40Q3UWA4 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Trim40Q3UWA4 Elp6-205ENSMUST00000199592 1304 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Trim40Q3UWA4 Hoxa3-201ENSMUST00000114434 2591 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Trim40Q3UWA4 Lpar1-201ENSMUST00000055018 3512 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
Trim40Q3UWA4 A3galt2-202ENSMUST00000106077 2114 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
Trim40Q3UWA4 Zfpm2-201ENSMUST00000053467 4974 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Trim40Q3UWA4 Slc25a25-204ENSMUST00000113308 2643 ntTSL 5 BASIC13.6□□□□□ -0.23
Trim40Q3UWA4 Olfml2a-201ENSMUST00000057279 5579 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Trim40Q3UWA4 Gm42878-202ENSMUST00000200170 4783 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
Trim40Q3UWA4 Hoxa7-201ENSMUST00000048715 2009 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Trim40Q3UWA4 Slc39a8-202ENSMUST00000081978 3314 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Trim40Q3UWA4 Tcf12-201ENSMUST00000034755 4621 ntAPPRIS ALT1 TSL 5 BASIC13.59□□□□□ -0.23
Trim40Q3UWA4 Ube3b-201ENSMUST00000074002 5194 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Trim40Q3UWA4 Phldb1-210ENSMUST00000134465 5244 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
Trim40Q3UWA4 Fut7-202ENSMUST00000100320 2076 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Trim40Q3UWA4 Skida1-201ENSMUST00000066885 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Trim40Q3UWA4 Gm42688-201ENSMUST00000101253 3628 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
Trim40Q3UWA4 Adarb1-201ENSMUST00000020496 6549 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Trim40Q3UWA4 Akap17b-201ENSMUST00000051906 6003 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
Trim40Q3UWA4 Saa1-201ENSMUST00000128088 609 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Trim40Q3UWA4 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Trim40Q3UWA4 Gm5577-203ENSMUST00000153372 815 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Trim40Q3UWA4 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC13.59□□□□□ -0.23
Trim40Q3UWA4 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC13.59□□□□□ -0.23
Trim40Q3UWA4 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Trim40Q3UWA4 Gm33142-201ENSMUST00000193913 867 ntBASIC13.59□□□□□ -0.23
Trim40Q3UWA4 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC13.59□□□□□ -0.23
Trim40Q3UWA4 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Trim40Q3UWA4 AC155729.1-201ENSMUST00000227758 544 ntBASIC13.59□□□□□ -0.23
Trim40Q3UWA4 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Trim40Q3UWA4 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Trim40Q3UWA4 Coq10b-202ENSMUST00000087617 834 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
Trim40Q3UWA4 Pcdh7-203ENSMUST00000191837 8785 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Trim40Q3UWA4 Tnks1bp1-202ENSMUST00000111605 5747 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Trim40Q3UWA4 Dis3l-203ENSMUST00000120760 3661 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Trim40Q3UWA4 Uros-203ENSMUST00000106145 1644 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Trim40Q3UWA4 Rnf114-201ENSMUST00000078050 2502 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Trim40Q3UWA4 Sept12-201ENSMUST00000170323 2576 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Trim40Q3UWA4 Pcnx3-201ENSMUST00000068169 5276 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Trim40Q3UWA4 Lgals8-202ENSMUST00000099821 2792 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Trim40Q3UWA4 R3hdm4-202ENSMUST00000171416 1543 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Trim40Q3UWA4 Ace-202ENSMUST00000001964 2418 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Trim40Q3UWA4 Rnpc3-202ENSMUST00000106535 2616 ntAPPRIS ALT1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Trim40Q3UWA4 Gpt-201ENSMUST00000023203 1749 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Trim40Q3UWA4 Acat2-201ENSMUST00000007005 2250 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Trim40Q3UWA4 Hps1-208ENSMUST00000162004 2847 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
Trim40Q3UWA4 Erfe-201ENSMUST00000086861 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Trim40Q3UWA4 Slc37a1-201ENSMUST00000165149 3354 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Trim40Q3UWA4 Slc25a18-201ENSMUST00000112682 1911 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Trim40Q3UWA4 Fhod3-201ENSMUST00000037097 5408 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Trim40Q3UWA4 Gipc2-201ENSMUST00000046614 1596 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Trim40Q3UWA4 Tmem38b-201ENSMUST00000030127 2862 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Trim40Q3UWA4 Tfap2c-206ENSMUST00000170744 2776 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Trim40Q3UWA4 Hdac10-202ENSMUST00000109347 1824 ntTSL 5 BASIC13.58□□□□□ -0.24
Trim40Q3UWA4 Gm7935-201ENSMUST00000100555 1278 ntBASIC13.58□□□□□ -0.24
Trim40Q3UWA4 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC13.58□□□□□ -0.24
Trim40Q3UWA4 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
Trim40Q3UWA4 Naa10-206ENSMUST00000114391 834 ntTSL 5 BASIC13.58□□□□□ -0.24
Trim40Q3UWA4 Gm14859-201ENSMUST00000117752 357 ntBASIC13.58□□□□□ -0.24
Trim40Q3UWA4 AC154471.1-201ENSMUST00000224418 436 ntBASIC13.58□□□□□ -0.24
Trim40Q3UWA4 Ydjc-201ENSMUST00000069064 1297 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Trim40Q3UWA4 Mettl2-201ENSMUST00000021030 1867 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Trim40Q3UWA4 Gm10110-201ENSMUST00000081204 1891 ntTSL 5 BASIC13.58□□□□□ -0.24
Trim40Q3UWA4 Ell-201ENSMUST00000093454 3072 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Trim40Q3UWA4 Edem3-203ENSMUST00000188145 3262 ntTSL 5 BASIC13.58□□□□□ -0.24
Trim40Q3UWA4 Dnmt3b-204ENSMUST00000088976 4130 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Trim40Q3UWA4 Rufy3-203ENSMUST00000196894 3703 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Trim40Q3UWA4 D230025D16Rik-201ENSMUST00000034361 2916 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Trim40Q3UWA4 Dlk1-205ENSMUST00000109844 1703 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Trim40Q3UWA4 Yes1-201ENSMUST00000072311 4586 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 29.9 ms