Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
Col17a1Q07563 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Col17a1Q07563 Gm37885-201ENSMUST00000192568 1391 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Col17a1Q07563 Pdcd6-203ENSMUST00000222759 1376 ntAPPRIS ALT1 TSL 2 BASIC21.8■■□□□ 1.08
Col17a1Q07563 Rpl17-ps5-201ENSMUST00000121001 555 ntBASIC21.8■■□□□ 1.08
Col17a1Q07563 Phgdh-ps1-201ENSMUST00000207540 754 ntBASIC21.8■■□□□ 1.08
Col17a1Q07563 E230034D01Rik-201ENSMUST00000214440 1212 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Col17a1Q07563 A430005L14Rik-201ENSMUST00000058393 1098 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Col17a1Q07563 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
Col17a1Q07563 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Col17a1Q07563 H2-Q1-201ENSMUST00000073208 2024 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
Col17a1Q07563 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Col17a1Q07563 Cyp1a2-201ENSMUST00000034860 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Col17a1Q07563 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
Col17a1Q07563 Ccno-201ENSMUST00000038404 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Col17a1Q07563 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Col17a1Q07563 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
Col17a1Q07563 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Col17a1Q07563 Gm11340-201ENSMUST00000119226 412 ntBASIC21.79■■□□□ 1.08
Col17a1Q07563 Tmem190-201ENSMUST00000013235 589 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Col17a1Q07563 Gm16172-201ENSMUST00000156224 682 ntTSL 3 BASIC21.79■■□□□ 1.08
Col17a1Q07563 Nudt2-201ENSMUST00000030154 845 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Col17a1Q07563 Nfkbia-201ENSMUST00000021413 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Col17a1Q07563 Lamp2-203ENSMUST00000074913 2184 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
Col17a1Q07563 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
Col17a1Q07563 Gm36839-201ENSMUST00000222088 2093 ntTSL 5 BASIC21.79■■□□□ 1.08
Col17a1Q07563 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC21.79■■□□□ 1.08
Col17a1Q07563 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
Col17a1Q07563 Arpin-201ENSMUST00000048731 2277 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Col17a1Q07563 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Col17a1Q07563 Igsf11-201ENSMUST00000023478 3443 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Col17a1Q07563 Gm8862-201ENSMUST00000198379 1346 ntBASIC21.78■■□□□ 1.08
Col17a1Q07563 Ctrc-202ENSMUST00000105781 784 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Col17a1Q07563 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
Col17a1Q07563 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
Col17a1Q07563 Cbfa2t2-ps1-201ENSMUST00000117165 730 ntBASIC21.78■■□□□ 1.08
Col17a1Q07563 Naa60-207ENSMUST00000150655 1166 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
Col17a1Q07563 2010320O07Rik-201ENSMUST00000160935 525 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Col17a1Q07563 Coa3-202ENSMUST00000168089 291 ntTSL 3 BASIC21.78■■□□□ 1.08
Col17a1Q07563 Adtrp-204ENSMUST00000179758 1046 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
Col17a1Q07563 Kitl-204ENSMUST00000218200 564 ntTSL 5 BASIC21.78■■□□□ 1.08
Col17a1Q07563 Trem3-201ENSMUST00000048065 994 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Col17a1Q07563 Trim68-205ENSMUST00000210855 2301 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Col17a1Q07563 Rgs17-203ENSMUST00000117676 1651 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Col17a1Q07563 Nkpd1-202ENSMUST00000207576 2916 ntAPPRIS P2 TSL 5 BASIC21.78■■□□□ 1.08
Col17a1Q07563 4933430H06Rik-201ENSMUST00000200924 1343 ntBASIC21.78■■□□□ 1.08
Col17a1Q07563 Zp3-201ENSMUST00000005073 1323 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Col17a1Q07563 Capn10-201ENSMUST00000027488 2902 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Col17a1Q07563 Cela2a-201ENSMUST00000102481 1070 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Col17a1Q07563 Gm13665-201ENSMUST00000120830 528 ntBASIC21.77■■□□□ 1.08
Col17a1Q07563 Gm15276-201ENSMUST00000145953 498 ntBASIC21.77■■□□□ 1.08
Col17a1Q07563 Cyb561-206ENSMUST00000184086 1130 ntTSL 5 BASIC21.77■■□□□ 1.08
Col17a1Q07563 Ube2a-202ENSMUST00000200835 911 ntTSL 5 BASIC21.77■■□□□ 1.08
Col17a1Q07563 Ube2a-209ENSMUST00000202991 715 ntAPPRIS ALT1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Col17a1Q07563 Gm45022-201ENSMUST00000208332 545 ntTSL 5 BASIC21.77■■□□□ 1.08
Col17a1Q07563 AC127270.1-201ENSMUST00000221441 491 ntTSL 3 BASIC21.77■■□□□ 1.08
Col17a1Q07563 Prr15l-202ENSMUST00000062172 1242 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Col17a1Q07563 Olfr366-201ENSMUST00000091001 930 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
Col17a1Q07563 Elf3-202ENSMUST00000185752 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Col17a1Q07563 Fbxo46-202ENSMUST00000165913 2498 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Col17a1Q07563 Nab1-204ENSMUST00000170269 1371 ntTSL 5 BASIC21.77■■□□□ 1.08
Col17a1Q07563 Taf6l-212ENSMUST00000177216 2167 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
Col17a1Q07563 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Col17a1Q07563 Gm8793-201ENSMUST00000183069 1303 ntBASIC21.77■■□□□ 1.08
Col17a1Q07563 Mfap4-202ENSMUST00000064783 1722 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
Col17a1Q07563 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
Col17a1Q07563 Snx29-207ENSMUST00000180792 2667 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.07
Col17a1Q07563 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.07
Col17a1Q07563 Gm13730-201ENSMUST00000121036 1462 ntBASIC21.77■■□□□ 1.07
Col17a1Q07563 Gm15131-201ENSMUST00000119124 595 ntBASIC21.77■■□□□ 1.07
Col17a1Q07563 Apoe-208ENSMUST00000174191 472 ntTSL 2 BASIC21.77■■□□□ 1.07
Col17a1Q07563 Gm28215-201ENSMUST00000186146 346 ntTSL 5 BASIC21.77■■□□□ 1.07
Col17a1Q07563 Gm42550-201ENSMUST00000201553 960 ntBASIC21.77■■□□□ 1.07
Col17a1Q07563 Plp2-201ENSMUST00000033486 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
Col17a1Q07563 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Col17a1Q07563 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Col17a1Q07563 Crem-239ENSMUST00000165086 2778 ntTSL 5 BASIC21.76■■□□□ 1.07
Col17a1Q07563 Wdr25-206ENSMUST00000221510 1600 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Col17a1Q07563 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC21.76■■□□□ 1.07
Col17a1Q07563 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Col17a1Q07563 Ubqln4-201ENSMUST00000008748 3330 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Col17a1Q07563 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
Col17a1Q07563 Stx4a-202ENSMUST00000121705 1316 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Col17a1Q07563 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
Col17a1Q07563 Map3k8-201ENSMUST00000025078 2507 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Col17a1Q07563 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Col17a1Q07563 Dhrs3-202ENSMUST00000105744 1226 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Col17a1Q07563 Timm10-202ENSMUST00000111631 564 ntAPPRIS P1 TSL 3 BASIC21.76■■□□□ 1.07
Col17a1Q07563 Gm6335-201ENSMUST00000118081 1194 ntBASIC21.76■■□□□ 1.07
Col17a1Q07563 Gm4760-201ENSMUST00000119663 1030 ntBASIC21.76■■□□□ 1.07
Col17a1Q07563 Gm7816-201ENSMUST00000119884 1194 ntBASIC21.76■■□□□ 1.07
Col17a1Q07563 Gm15542-201ENSMUST00000121585 1194 ntBASIC21.76■■□□□ 1.07
Col17a1Q07563 Gm24548-201ENSMUST00000158650 108 ntBASIC21.76■■□□□ 1.07
Col17a1Q07563 Pde4b-210ENSMUST00000172616 823 ntTSL 5 BASIC21.76■■□□□ 1.07
Col17a1Q07563 Gm29087-201ENSMUST00000186462 645 ntTSL 5 BASIC21.76■■□□□ 1.07
Col17a1Q07563 Gm44172-201ENSMUST00000203903 1235 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Col17a1Q07563 Rpl18a-201ENSMUST00000054220 1260 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Col17a1Q07563 Gm44579-201ENSMUST00000142443 2064 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
Col17a1Q07563 Gm45244-201ENSMUST00000211328 2200 ntBASIC21.76■■□□□ 1.07
Col17a1Q07563 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Retrieved 100 of 76,532 protein–RNA pairs in 29.4 ms