Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Pbx3-202ENSMUST00000113132 2734 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdx1P18111 Tspan9-202ENSMUST00000112171 2584 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdx1P18111 Pcgf5-211ENSMUST00000225920 6443 ntBASIC11.72□□□□□ -0.53
Cdx1P18111 Ppil3-202ENSMUST00000114345 1175 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Cdx1P18111 Gm1401-201ENSMUST00000122048 772 ntBASIC11.72□□□□□ -0.53
Cdx1P18111 Sardhos-201ENSMUST00000170435 265 ntTSL 3 BASIC11.72□□□□□ -0.53
Cdx1P18111 Gm42413-201ENSMUST00000196216 338 ntTSL 5 BASIC11.72□□□□□ -0.53
Cdx1P18111 Gm43073-201ENSMUST00000198200 1189 ntBASIC11.72□□□□□ -0.53
Cdx1P18111 Gm10060-201ENSMUST00000212002 111 ntBASIC11.72□□□□□ -0.53
Cdx1P18111 AC148328.1-201ENSMUST00000216448 920 ntTSL 5 BASIC11.72□□□□□ -0.53
Cdx1P18111 Vti1a-206ENSMUST00000225529 1244 ntBASIC11.72□□□□□ -0.53
Cdx1P18111 Rbfox2-207ENSMUST00000227533 1041 ntBASIC11.72□□□□□ -0.53
Cdx1P18111 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdx1P18111 Gins3-201ENSMUST00000034094 2519 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdx1P18111 Palm3-201ENSMUST00000055077 2452 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdx1P18111 Steap2-201ENSMUST00000015797 3657 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdx1P18111 Ncdn-202ENSMUST00000106116 2434 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdx1P18111 Kdm6a-201ENSMUST00000044484 5918 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
Cdx1P18111 Kdm6a-202ENSMUST00000052368 5935 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Cdx1P18111 Gm2420-202ENSMUST00000202224 2249 ntBASIC11.72□□□□□ -0.53
Cdx1P18111 Trem1-202ENSMUST00000113251 2077 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Cdx1P18111 Esm1-201ENSMUST00000038144 2097 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdx1P18111 Sned1-201ENSMUST00000062202 9147 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdx1P18111 Arhgef2-229ENSMUST00000177303 3000 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
Cdx1P18111 Grk6-203ENSMUST00000224118 1997 ntAPPRIS ALT2 BASIC11.72□□□□□ -0.53
Cdx1P18111 Lrig2-205ENSMUST00000198332 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdx1P18111 Rab10os-202ENSMUST00000177896 2872 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Cdx1P18111 Dgki-202ENSMUST00000090314 3784 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
Cdx1P18111 Klhl18-203ENSMUST00000198164 4538 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Cdx1P18111 Osbp2-202ENSMUST00000101632 2697 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
Cdx1P18111 Rnf10-203ENSMUST00000112097 3476 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdx1P18111 Sfpq-201ENSMUST00000030623 3465 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdx1P18111 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC11.71□□□□□ -0.53
Cdx1P18111 Clcn4-203ENSMUST00000210061 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cdx1P18111 Jakmip1-201ENSMUST00000043794 2383 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cdx1P18111 Yipf6-201ENSMUST00000054697 5211 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cdx1P18111 Irf7-203ENSMUST00000106023 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cdx1P18111 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Cdx1P18111 Brsk2-202ENSMUST00000075528 2160 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Cdx1P18111 Trmt1-205ENSMUST00000125370 2114 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.53
Cdx1P18111 Rbl1-201ENSMUST00000029170 4862 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cdx1P18111 Il1r1-202ENSMUST00000114795 4832 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cdx1P18111 Vars-201ENSMUST00000087315 4137 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cdx1P18111 Lag3-201ENSMUST00000032217 2001 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cdx1P18111 Slc38a1-201ENSMUST00000088452 7266 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cdx1P18111 Adgrb2-202ENSMUST00000097868 4635 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.53
Cdx1P18111 Dgcr8-202ENSMUST00000115633 4522 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
Cdx1P18111 Tfap2b-202ENSMUST00000064976 1946 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Cdx1P18111 Sdhb-201ENSMUST00000010007 1142 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cdx1P18111 Gm20324-201ENSMUST00000186291 1118 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Cdx1P18111 2810030D12Rik-203ENSMUST00000190461 1039 ntBASIC11.71□□□□□ -0.53
Cdx1P18111 Gm37935-201ENSMUST00000192012 982 ntBASIC11.71□□□□□ -0.53
Cdx1P18111 Mtus2-201ENSMUST00000071878 1211 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Cdx1P18111 Ythdf2-201ENSMUST00000085181 955 ntTSL 2 BASIC11.71□□□□□ -0.53
Cdx1P18111 Lmbr1l-202ENSMUST00000109127 2548 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Cdx1P18111 Rnf10-202ENSMUST00000112096 3112 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cdx1P18111 Gemin5-205ENSMUST00000172035 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cdx1P18111 Ghdc-201ENSMUST00000017891 2462 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cdx1P18111 Slc26a4-201ENSMUST00000001253 3075 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cdx1P18111 Pcyox1-201ENSMUST00000032065 4295 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Cdx1P18111 Glb1-201ENSMUST00000063042 2396 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Cdx1P18111 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Cdx1P18111 E230016M11Rik-201ENSMUST00000130657 1764 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Cdx1P18111 Mfsd4b4-202ENSMUST00000178563 3523 ntTSL 5 BASIC11.71□□□□□ -0.54
Cdx1P18111 Ppp3cb-206ENSMUST00000161989 2322 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Cdx1P18111 Camta1-211ENSMUST00000169423 5208 ntAPPRIS P2 TSL 5 BASIC11.71□□□□□ -0.54
Cdx1P18111 Nkain3-202ENSMUST00000119374 4567 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Cdx1P18111 Txnrd3-201ENSMUST00000000828 2836 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Cdx1P18111 Gm44241-201ENSMUST00000203230 1662 ntBASIC11.71□□□□□ -0.54
Cdx1P18111 Hid1-202ENSMUST00000106542 3276 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.54
Cdx1P18111 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.54
Cdx1P18111 Grm6-201ENSMUST00000000631 4291 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.54
Cdx1P18111 Galns-203ENSMUST00000212319 2111 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Cdx1P18111 Anks1b-213ENSMUST00000182284 2607 ntTSL 5 BASIC11.71□□□□□ -0.54
Cdx1P18111 Gm5049-201ENSMUST00000195878 1590 ntBASIC11.71□□□□□ -0.54
Cdx1P18111 Rcor2-202ENSMUST00000113369 2013 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Cdx1P18111 Gorab-201ENSMUST00000045138 2538 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cdx1P18111 Osbpl11-201ENSMUST00000039733 4520 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cdx1P18111 Rbm33-201ENSMUST00000030920 3955 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Cdx1P18111 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Cdx1P18111 Nudt18-201ENSMUST00000089049 3926 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cdx1P18111 Ilvbl-212ENSMUST00000220430 2350 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Cdx1P18111 Gid4-201ENSMUST00000070681 4283 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cdx1P18111 Pus1-204ENSMUST00000112426 1389 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Cdx1P18111 Ubxn4-201ENSMUST00000027592 4113 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cdx1P18111 Fgfr1-202ENSMUST00000117179 4046 ntAPPRIS ALT1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cdx1P18111 B430212C06Rik-205ENSMUST00000145081 2623 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Cdx1P18111 Ldlrap1-201ENSMUST00000037828 6549 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cdx1P18111 Gm38318-201ENSMUST00000195769 1706 ntBASIC11.7□□□□□ -0.54
Cdx1P18111 Tmem254c-202ENSMUST00000100819 1211 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cdx1P18111 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cdx1P18111 Fbxo17-205ENSMUST00000167118 861 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
Cdx1P18111 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC11.7□□□□□ -0.54
Cdx1P18111 Mir5131-201ENSMUST00000175426 93 ntBASIC11.7□□□□□ -0.54
Cdx1P18111 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Cdx1P18111 Gm27002-201ENSMUST00000182789 620 ntTSL 2 BASIC11.7□□□□□ -0.54
Cdx1P18111 Dusp13-208ENSMUST00000183698 1019 ntTSL 5 BASIC11.7□□□□□ -0.54
Cdx1P18111 A430093F15Rik-204ENSMUST00000186596 2115 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Cdx1P18111 Rpsa-ps1-201ENSMUST00000191040 886 ntBASIC11.7□□□□□ -0.54
Cdx1P18111 Gm44357-201ENSMUST00000195897 142 ntBASIC11.7□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 27.9 ms