Protein–RNA interactions for Protein: O88544

Cops4, COP9 signalosome complex subunit 4, mousemouse

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cops4O88544 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Cops4O88544 Exosc5-206ENSMUST00000206561 1680 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cops4O88544 Mettl27-202ENSMUST00000068617 1685 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Cops4O88544 AC126250.1-201ENSMUST00000228343 1768 ntBASIC13.39□□□□□ -0.27
Cops4O88544 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cops4O88544 Cyp27a1-201ENSMUST00000027356 1892 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cops4O88544 Slc45a1-201ENSMUST00000037827 3387 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cops4O88544 Zbtb5-202ENSMUST00000107817 3867 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cops4O88544 Tbc1d1-201ENSMUST00000043893 6471 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.27
Cops4O88544 Acap2-201ENSMUST00000058033 6493 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cops4O88544 Plch2-208ENSMUST00000145662 1818 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Cops4O88544 Cgn-201ENSMUST00000107272 4963 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cops4O88544 Zfpm2-201ENSMUST00000053467 4974 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cops4O88544 Dnase1l2-202ENSMUST00000119932 1629 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cops4O88544 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cops4O88544 Cct4-204ENSMUST00000173867 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cops4O88544 Pde10a-202ENSMUST00000089085 7717 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cops4O88544 Caprin2-202ENSMUST00000111569 3697 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cops4O88544 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cops4O88544 Fgf9-201ENSMUST00000022545 1593 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cops4O88544 1810008I18Rik-201ENSMUST00000185464 2419 ntBASIC13.38□□□□□ -0.27
Cops4O88544 Lamc2-201ENSMUST00000027753 5164 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
Cops4O88544 Prickle3-201ENSMUST00000033485 2301 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cops4O88544 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cops4O88544 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Cops4O88544 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cops4O88544 1700021A07Rik-203ENSMUST00000188024 404 ntTSL 3 BASIC13.38□□□□□ -0.27
Cops4O88544 Ank2-226ENSMUST00000189368 339 ntBASIC13.38□□□□□ -0.27
Cops4O88544 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Cops4O88544 Cald1-201ENSMUST00000031775 2142 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
Cops4O88544 Apol7d-201ENSMUST00000097699 826 ntTSL 2 BASIC13.38□□□□□ -0.27
Cops4O88544 Reep5-201ENSMUST00000006027 2894 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cops4O88544 Dzip1-202ENSMUST00000047208 4476 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
Cops4O88544 Dmkn-203ENSMUST00000085688 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cops4O88544 Opa1-201ENSMUST00000038867 3230 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Cops4O88544 P2ry2-201ENSMUST00000037540 3011 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cops4O88544 Igsf9b-202ENSMUST00000133213 4239 ntAPPRIS P2 TSL 5 BASIC13.38□□□□□ -0.27
Cops4O88544 Dnase1l1-201ENSMUST00000019232 1625 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cops4O88544 Sned1-201ENSMUST00000062202 9147 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cops4O88544 Rnf168-201ENSMUST00000014218 3932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cops4O88544 Kcnma1-214ENSMUST00000190044 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cops4O88544 Apaf1-201ENSMUST00000020157 6577 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cops4O88544 Gm42872-201ENSMUST00000200026 1967 ntBASIC13.38□□□□□ -0.27
Cops4O88544 Tcf12-201ENSMUST00000034755 4621 ntAPPRIS ALT1 TSL 5 BASIC13.38□□□□□ -0.27
Cops4O88544 Mfng-201ENSMUST00000018313 1865 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cops4O88544 A230087F16Rik-202ENSMUST00000181561 1303 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Cops4O88544 Kcp-201ENSMUST00000078112 4775 ntTSL 5 BASIC13.37□□□□□ -0.27
Cops4O88544 Ikzf5-202ENSMUST00000121033 2231 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Cops4O88544 Aldh16a1-201ENSMUST00000107815 2685 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Cops4O88544 Diaph1-202ENSMUST00000080033 4378 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cops4O88544 4731419I09Rik-201ENSMUST00000180791 2820 ntTSL 2 BASIC13.37□□□□□ -0.27
Cops4O88544 Nfe2l1-204ENSMUST00000107659 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cops4O88544 Jakmip1-201ENSMUST00000043794 2383 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cops4O88544 AC122301.2-201ENSMUST00000219020 1474 ntTSL 5 BASIC13.37□□□□□ -0.27
Cops4O88544 Slc7a7-206ENSMUST00000197440 2278 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cops4O88544 Popdc2-201ENSMUST00000023494 2169 ntAPPRIS P4 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cops4O88544 Fam20a-201ENSMUST00000020938 2541 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cops4O88544 Ube3b-201ENSMUST00000074002 5194 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cops4O88544 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cops4O88544 Gm15655-201ENSMUST00000134649 440 ntTSL 2 BASIC13.37□□□□□ -0.27
Cops4O88544 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Cops4O88544 Gm21362-201ENSMUST00000194272 928 ntBASIC13.37□□□□□ -0.27
Cops4O88544 Gm26646-202ENSMUST00000205705 439 ntTSL 5 BASIC13.37□□□□□ -0.27
Cops4O88544 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC13.37□□□□□ -0.27
Cops4O88544 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC13.37□□□□□ -0.27
Cops4O88544 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cops4O88544 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cops4O88544 Spr-ps1-201ENSMUST00000089584 605 ntBASIC13.37□□□□□ -0.27
Cops4O88544 Bcl11b-201ENSMUST00000066060 8111 ntAPPRIS P4 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cops4O88544 Gm3373-202ENSMUST00000177556 1955 ntAPPRIS P5 TSL 5 BASIC13.37□□□□□ -0.27
Cops4O88544 Gm3500-201ENSMUST00000177986 1955 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
Cops4O88544 Dhrs3-206ENSMUST00000154208 2337 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cops4O88544 Slc52a3-201ENSMUST00000073228 2669 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cops4O88544 Pigg-202ENSMUST00000118910 3030 ntTSL 5 BASIC13.37□□□□□ -0.27
Cops4O88544 Traf2-201ENSMUST00000028311 3044 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cops4O88544 Stat3-201ENSMUST00000092671 2927 ntAPPRIS ALT1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cops4O88544 Gm14451-201ENSMUST00000121581 1542 ntBASIC13.37□□□□□ -0.27
Cops4O88544 CT025610.1-201ENSMUST00000224552 1786 ntBASIC13.37□□□□□ -0.27
Cops4O88544 Ssh1-204ENSMUST00000159592 8436 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cops4O88544 Bcl7b-203ENSMUST00000111188 1434 ntAPPRIS ALT1 TSL 5 BASIC13.37□□□□□ -0.27
Cops4O88544 Tnpo2-201ENSMUST00000093360 4863 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cops4O88544 Cyp4x1os-201ENSMUST00000153951 2003 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Cops4O88544 Atg16l1-201ENSMUST00000027512 3130 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cops4O88544 Secisbp2l-201ENSMUST00000053699 6797 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cops4O88544 Snph-201ENSMUST00000028951 4730 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cops4O88544 Dnm1-203ENSMUST00000113350 3258 ntAPPRIS ALT1 TSL 5 BASIC13.37□□□□□ -0.27
Cops4O88544 Ythdf2-203ENSMUST00000152796 4129 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cops4O88544 Sema3b-205ENSMUST00000102532 3191 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cops4O88544 Hlcs-202ENSMUST00000163193 5371 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cops4O88544 Serinc5-201ENSMUST00000049488 5366 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cops4O88544 Slc5a6-202ENSMUST00000114668 3436 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cops4O88544 Slc19a2-202ENSMUST00000159230 3432 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Cops4O88544 Atat1-202ENSMUST00000061052 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cops4O88544 Cnnm2-202ENSMUST00000099373 3558 ntAPPRIS P4 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cops4O88544 Islr2-201ENSMUST00000114144 3880 ntAPPRIS P3 TSL 2 BASIC13.36□□□□□ -0.27
Cops4O88544 Aifm3-202ENSMUST00000115685 2357 ntAPPRIS ALT1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cops4O88544 Tmem30a-201ENSMUST00000034878 3658 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cops4O88544 Yes1-201ENSMUST00000072311 4586 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cops4O88544 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
Cops4O88544 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 57.9 ms