Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Gars-201ENSMUST00000003572 2380 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Pcdh1F7BJK1 Ubqln2-201ENSMUST00000060714 3344 ntAPPRIS P1 BASIC13.05□□□□□ -0.32
Pcdh1F7BJK1 Ssh3-202ENSMUST00000113852 2735 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Pcdh1F7BJK1 Ssh3-201ENSMUST00000037992 2728 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Pcdh1F7BJK1 Cblb-204ENSMUST00000227062 3728 ntAPPRIS P2 BASIC13.04□□□□□ -0.32
Pcdh1F7BJK1 Kif7-204ENSMUST00000184137 4093 ntAPPRIS P3 TSL 5 BASIC13.04□□□□□ -0.32
Pcdh1F7BJK1 Matn2-206ENSMUST00000228570 2798 ntBASIC13.04□□□□□ -0.32
Pcdh1F7BJK1 Slc4a2-201ENSMUST00000080067 4179 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Pcdh1F7BJK1 Srpx-203ENSMUST00000115544 1865 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Pcdh1F7BJK1 Hnrnpm-202ENSMUST00000114385 2550 ntTSL 2 BASIC13.04□□□□□ -0.32
Pcdh1F7BJK1 Cd72-202ENSMUST00000098104 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Pcdh1F7BJK1 Erbb2-201ENSMUST00000058295 5012 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Pcdh1F7BJK1 Tcn2-204ENSMUST00000109990 1914 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Pcdh1F7BJK1 Gm11405-201ENSMUST00000118689 1556 ntBASIC13.04□□□□□ -0.32
Pcdh1F7BJK1 Gnb2-212ENSMUST00000150063 1569 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Pcdh1F7BJK1 Kctd14-206ENSMUST00000206658 2339 ntAPPRIS P3 TSL 3 BASIC13.04□□□□□ -0.32
Pcdh1F7BJK1 Lyrm1-203ENSMUST00000106517 1279 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Pcdh1F7BJK1 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC13.04□□□□□ -0.32
Pcdh1F7BJK1 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC13.04□□□□□ -0.32
Pcdh1F7BJK1 Gm11455-201ENSMUST00000149285 733 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Pcdh1F7BJK1 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
Pcdh1F7BJK1 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
Pcdh1F7BJK1 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC13.04□□□□□ -0.32
Pcdh1F7BJK1 Gm43935-201ENSMUST00000203569 1050 ntBASIC13.04□□□□□ -0.32
Pcdh1F7BJK1 Scamp5-203ENSMUST00000214256 1025 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Pcdh1F7BJK1 Cdpf1-201ENSMUST00000071876 997 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Pcdh1F7BJK1 Fgfr3-210ENSMUST00000169212 4245 ntAPPRIS P4 TSL 1 (best) BASIC13.04□□□□□ -0.32
Pcdh1F7BJK1 Ptbp3-205ENSMUST00000148331 2016 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
Pcdh1F7BJK1 Espn-220ENSMUST00000207676 4618 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
Pcdh1F7BJK1 Spg20-204ENSMUST00000118118 3981 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
Pcdh1F7BJK1 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Pcdh1F7BJK1 Rfx5-203ENSMUST00000107254 4450 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Pcdh1F7BJK1 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Pcdh1F7BJK1 Gm37411-201ENSMUST00000194180 2282 ntBASIC13.04□□□□□ -0.32
Pcdh1F7BJK1 Cenpl-203ENSMUST00000111620 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Pcdh1F7BJK1 Spsb1-203ENSMUST00000105685 1537 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Pcdh1F7BJK1 Krt42-201ENSMUST00000017270 1542 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Pcdh1F7BJK1 Kdm5c-202ENSMUST00000112584 5900 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
Pcdh1F7BJK1 Gm11992-201ENSMUST00000043285 2400 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Pcdh1F7BJK1 Gpr153-202ENSMUST00000105650 3838 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
Pcdh1F7BJK1 Gm26688-201ENSMUST00000181176 1568 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Pcdh1F7BJK1 Gpx3-201ENSMUST00000082430 1594 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Pcdh1F7BJK1 Syngap1-202ENSMUST00000177932 3927 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
Pcdh1F7BJK1 Pcolce-201ENSMUST00000031731 1626 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Pcdh1F7BJK1 Hcrtr1-201ENSMUST00000030562 2187 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Pcdh1F7BJK1 Foxi2-201ENSMUST00000060356 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Pcdh1F7BJK1 Arhgef40-201ENSMUST00000093813 5621 ntAPPRIS P4 TSL 1 (best) BASIC13.03□□□□□ -0.32
Pcdh1F7BJK1 Mapk9-210ENSMUST00000178543 4677 ntAPPRIS ALT1 TSL 5 BASIC13.03□□□□□ -0.32
Pcdh1F7BJK1 Park7-204ENSMUST00000105675 882 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Pcdh1F7BJK1 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Pcdh1F7BJK1 Zglp1-201ENSMUST00000115494 1010 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Pcdh1F7BJK1 Gm14042-201ENSMUST00000120139 833 ntBASIC13.03□□□□□ -0.32
Pcdh1F7BJK1 0610025J13Rik-201ENSMUST00000131324 652 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Pcdh1F7BJK1 CR974585.1-201ENSMUST00000221790 1263 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Pcdh1F7BJK1 Neurl2-201ENSMUST00000042775 1014 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Pcdh1F7BJK1 Ly6k-201ENSMUST00000060301 791 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Pcdh1F7BJK1 Dhrs3-206ENSMUST00000154208 2337 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Pcdh1F7BJK1 Ankrd34b-203ENSMUST00000168871 3397 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Pcdh1F7BJK1 Arfip1-203ENSMUST00000143514 1343 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Pcdh1F7BJK1 Mtg2-201ENSMUST00000087563 1346 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Pcdh1F7BJK1 5730559C18Rik-201ENSMUST00000120339 2988 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Pcdh1F7BJK1 Satb2-201ENSMUST00000042857 6277 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Pcdh1F7BJK1 Ntf3-202ENSMUST00000112244 1399 ntAPPRIS ALT1 TSL 3 BASIC13.03□□□□□ -0.32
Pcdh1F7BJK1 Gm18856-201ENSMUST00000178096 1374 ntBASIC13.03□□□□□ -0.32
Pcdh1F7BJK1 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC13.03□□□□□ -0.32
Pcdh1F7BJK1 Col8a2-201ENSMUST00000070132 4332 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Pcdh1F7BJK1 Syt13-201ENSMUST00000028648 3761 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Pcdh1F7BJK1 Reep5-201ENSMUST00000006027 2894 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Pcdh1F7BJK1 Ap4e1-203ENSMUST00000110394 2271 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Pcdh1F7BJK1 Ywhag-205ENSMUST00000198270 1610 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.32
Pcdh1F7BJK1 AC131743.5-201ENSMUST00000220775 1618 ntBASIC13.02□□□□□ -0.32
Pcdh1F7BJK1 Flt3-201ENSMUST00000049324 3657 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Pcdh1F7BJK1 AI480526-202ENSMUST00000159637 1697 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Pcdh1F7BJK1 Tspan11-201ENSMUST00000032501 5188 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Pcdh1F7BJK1 Ino80-202ENSMUST00000110808 3928 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Pcdh1F7BJK1 Rcbtb1-202ENSMUST00000043227 3903 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Pcdh1F7BJK1 Gnpda2-201ENSMUST00000031117 1894 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.32
Pcdh1F7BJK1 Cacna2d1-205ENSMUST00000167946 7436 ntAPPRIS ALT1 TSL 5 BASIC13.02□□□□□ -0.32
Pcdh1F7BJK1 Scml4-203ENSMUST00000105495 1033 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Pcdh1F7BJK1 Rbmx-202ENSMUST00000114726 2108 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Pcdh1F7BJK1 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC13.02□□□□□ -0.33
Pcdh1F7BJK1 Ly6g6e-204ENSMUST00000172959 501 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Pcdh1F7BJK1 Gm4691-201ENSMUST00000182339 1000 ntBASIC13.02□□□□□ -0.33
Pcdh1F7BJK1 Gm2451-201ENSMUST00000199447 999 ntBASIC13.02□□□□□ -0.33
Pcdh1F7BJK1 Gm10290-201ENSMUST00000200451 999 ntBASIC13.02□□□□□ -0.33
Pcdh1F7BJK1 Gm45167-201ENSMUST00000208007 322 ntBASIC13.02□□□□□ -0.33
Pcdh1F7BJK1 Gm6376-201ENSMUST00000209407 580 ntBASIC13.02□□□□□ -0.33
Pcdh1F7BJK1 Ndufs6-204ENSMUST00000223293 757 ntTSL 2 BASIC13.02□□□□□ -0.33
Pcdh1F7BJK1 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC13.02□□□□□ -0.33
Pcdh1F7BJK1 Gm13294-201ENSMUST00000121757 1330 ntBASIC13.02□□□□□ -0.33
Pcdh1F7BJK1 Gm5366-201ENSMUST00000215494 1338 ntBASIC13.02□□□□□ -0.33
Pcdh1F7BJK1 Robo4-205ENSMUST00000214185 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Pcdh1F7BJK1 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Pcdh1F7BJK1 Kcnip1-202ENSMUST00000101368 2322 ntTSL 2 BASIC13.02□□□□□ -0.33
Pcdh1F7BJK1 B3gnt8-201ENSMUST00000076034 1463 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Pcdh1F7BJK1 Sema5b-202ENSMUST00000120756 4646 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Pcdh1F7BJK1 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Pcdh1F7BJK1 Gm30238-201ENSMUST00000195528 2603 ntBASIC13.02□□□□□ -0.33
Pcdh1F7BJK1 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
Pcdh1F7BJK1 Alg10b-201ENSMUST00000100309 3727 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 33.4 ms