Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Arhgef33-209ENSMUST00000225223 714 ntBASIC14.18□□□□□ -0.14
Chd3B1AR17 Cited1-201ENSMUST00000050551 901 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Chd3B1AR17 C330018A13Rik-201ENSMUST00000127792 1599 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Chd3B1AR17 Gm36839-201ENSMUST00000222088 2093 ntTSL 5 BASIC14.18□□□□□ -0.14
Chd3B1AR17 P3h1-203ENSMUST00000102662 2977 ntAPPRIS P3 TSL 5 BASIC14.18□□□□□ -0.14
Chd3B1AR17 Nupr1l-201ENSMUST00000178355 1827 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
Chd3B1AR17 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Chd3B1AR17 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Chd3B1AR17 Adcy5-201ENSMUST00000114913 7007 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Chd3B1AR17 Dlgap4-204ENSMUST00000109566 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Chd3B1AR17 Tbx15-201ENSMUST00000029462 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Chd3B1AR17 Acrbp-205ENSMUST00000112414 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Chd3B1AR17 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Chd3B1AR17 Ccnf-201ENSMUST00000115390 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Chd3B1AR17 Gm36236-201ENSMUST00000220780 701 ntTSL 3 BASIC14.18□□□□□ -0.14
Chd3B1AR17 Cartpt-201ENSMUST00000022150 827 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Chd3B1AR17 Cartpt-202ENSMUST00000224142 1238 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
Chd3B1AR17 Tlcd2-201ENSMUST00000043598 1153 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Chd3B1AR17 Hdac8-201ENSMUST00000087916 1936 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Chd3B1AR17 Apc2-202ENSMUST00000105359 9173 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Chd3B1AR17 Tsc22d2-203ENSMUST00000199164 4659 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Chd3B1AR17 Pex1-202ENSMUST00000121291 4555 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Chd3B1AR17 Tpm2-202ENSMUST00000107913 2098 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Chd3B1AR17 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Chd3B1AR17 Zfand3-201ENSMUST00000057897 2617 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Chd3B1AR17 Syvn1-203ENSMUST00000134667 3159 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Chd3B1AR17 Magi1-208ENSMUST00000204347 7929 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Chd3B1AR17 Kcng1-201ENSMUST00000099069 2316 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Chd3B1AR17 Gtf2e2-201ENSMUST00000167264 1566 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Chd3B1AR17 Gm45751-201ENSMUST00000210185 1573 ntBASIC14.17□□□□□ -0.14
Chd3B1AR17 Nfkbia-201ENSMUST00000021413 1578 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Chd3B1AR17 Tdrd7-201ENSMUST00000102929 3716 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Chd3B1AR17 Map2k7-202ENSMUST00000062686 3525 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Chd3B1AR17 9130017K11Rik-202ENSMUST00000135670 3338 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Chd3B1AR17 Pth2r-201ENSMUST00000027083 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Chd3B1AR17 Gm21854-201ENSMUST00000179901 471 ntBASIC14.17□□□□□ -0.14
Chd3B1AR17 Wdr45-225ENSMUST00000208443 1172 ntTSL 5 BASIC14.17□□□□□ -0.14
Chd3B1AR17 Gm7653-201ENSMUST00000214567 508 ntBASIC14.17□□□□□ -0.14
Chd3B1AR17 Mrpl27-201ENSMUST00000025278 756 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Chd3B1AR17 Casp16-ps-201ENSMUST00000088673 531 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Chd3B1AR17 Hist1h3b-201ENSMUST00000091703 620 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Chd3B1AR17 G3bp2-202ENSMUST00000164378 3026 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Chd3B1AR17 Nfyb-204ENSMUST00000130911 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Chd3B1AR17 Csrnp1-203ENSMUST00000214058 2241 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Chd3B1AR17 Gm14812-201ENSMUST00000156494 1794 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Chd3B1AR17 Slc6a8-203ENSMUST00000114465 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Chd3B1AR17 Cdca5-201ENSMUST00000025704 2024 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Chd3B1AR17 4933421O10Rik-201ENSMUST00000155691 3847 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Chd3B1AR17 Tcf19-203ENSMUST00000161012 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Chd3B1AR17 Isg20l2-201ENSMUST00000055984 2893 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Chd3B1AR17 Magi1-202ENSMUST00000089317 7209 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Chd3B1AR17 Tle1-202ENSMUST00000072695 3644 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Chd3B1AR17 Map3k8-201ENSMUST00000025078 2507 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Chd3B1AR17 Hist3h2bb-ps-201ENSMUST00000117558 465 ntBASIC14.16□□□□□ -0.14
Chd3B1AR17 Gm7820-201ENSMUST00000121012 1052 ntBASIC14.16□□□□□ -0.14
Chd3B1AR17 Mecp2-204ENSMUST00000140399 1168 ntTSL 5 BASIC14.16□□□□□ -0.14
Chd3B1AR17 Gm29585-201ENSMUST00000185270 514 ntTSL 5 BASIC14.16□□□□□ -0.14
Chd3B1AR17 Ppcdc-205ENSMUST00000214144 724 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Chd3B1AR17 Lce1d-201ENSMUST00000029524 678 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Chd3B1AR17 Pdlim7-202ENSMUST00000069929 899 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Chd3B1AR17 Slc20a2-201ENSMUST00000067786 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Chd3B1AR17 Ttc13-210ENSMUST00000214828 3301 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Chd3B1AR17 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC14.16□□□□□ -0.14
Chd3B1AR17 Mapk9-205ENSMUST00000109179 4682 ntTSL 5 BASIC14.16□□□□□ -0.14
Chd3B1AR17 Mapk9-209ENSMUST00000164643 4682 ntTSL 5 BASIC14.16□□□□□ -0.14
Chd3B1AR17 Ispd-202ENSMUST00000220519 3122 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Chd3B1AR17 Cdk8-205ENSMUST00000161181 2467 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Chd3B1AR17 Slc46a3-202ENSMUST00000118527 2210 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Chd3B1AR17 Rasal3-204ENSMUST00000135618 3293 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Chd3B1AR17 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Chd3B1AR17 Ren1-201ENSMUST00000094556 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Chd3B1AR17 Atp2b3-203ENSMUST00000114479 4637 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Chd3B1AR17 Adgrb2-204ENSMUST00000106015 4982 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Chd3B1AR17 Nyap1-201ENSMUST00000061789 3912 ntAPPRIS P3 TSL 5 BASIC14.16□□□□□ -0.14
Chd3B1AR17 Anks1-202ENSMUST00000088027 6781 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Chd3B1AR17 Ebf4-202ENSMUST00000110287 2580 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Chd3B1AR17 Crat-202ENSMUST00000102854 2160 ntTSL 5 BASIC14.16□□□□□ -0.14
Chd3B1AR17 Sgtb-201ENSMUST00000044385 3048 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Chd3B1AR17 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Chd3B1AR17 Slc38a7-201ENSMUST00000040481 3333 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Chd3B1AR17 Myl4-203ENSMUST00000106957 943 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
Chd3B1AR17 Nabp1-202ENSMUST00000185534 708 ntTSL 2 BASIC14.16□□□□□ -0.14
Chd3B1AR17 Lyzl6-201ENSMUST00000021328 900 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Chd3B1AR17 B230219D22Rik-201ENSMUST00000057844 4652 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Chd3B1AR17 Selenon-201ENSMUST00000060435 3445 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Chd3B1AR17 Syn2-201ENSMUST00000009538 2708 ntAPPRIS P4 TSL 1 (best) BASIC14.16□□□□□ -0.14
Chd3B1AR17 Cct6b-202ENSMUST00000100722 1871 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Chd3B1AR17 Asic3-201ENSMUST00000049346 1853 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Chd3B1AR17 Six1-201ENSMUST00000050029 3316 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Chd3B1AR17 Smyd4-201ENSMUST00000044530 3517 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Chd3B1AR17 Gm6263-201ENSMUST00000120029 1342 ntBASIC14.16□□□□□ -0.14
Chd3B1AR17 Cldn14-201ENSMUST00000050962 1457 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Chd3B1AR17 Prrxl1-203ENSMUST00000187377 1629 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Chd3B1AR17 Mmp11-202ENSMUST00000120281 1793 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Chd3B1AR17 Nup54-201ENSMUST00000038514 2352 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Chd3B1AR17 Faf1-201ENSMUST00000102724 4468 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Chd3B1AR17 Grin1os-201ENSMUST00000129723 2891 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Chd3B1AR17 Tesk2-203ENSMUST00000106459 2444 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Chd3B1AR17 Itpk1-201ENSMUST00000046518 2918 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Chd3B1AR17 Snx14-204ENSMUST00000165315 3109 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 35.4 ms