Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 4932422M17Rik-201ENSMUST00000195992 2639 ntBASIC17.11■□□□□ 0.33
Trim56Q80VI1 Elmod1-201ENSMUST00000048409 2605 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim56Q80VI1 Sem1-201ENSMUST00000041111 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim56Q80VI1 Grik2-210ENSMUST00000220263 2085 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Trim56Q80VI1 Adam9-202ENSMUST00000084035 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim56Q80VI1 Ric1-201ENSMUST00000043610 7190 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Trim56Q80VI1 Exoc3l-201ENSMUST00000057855 2497 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim56Q80VI1 Tle3-210ENSMUST00000161207 2592 ntTSL 5 BASIC17.1■□□□□ 0.33
Trim56Q80VI1 Tctn3-202ENSMUST00000132452 1271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim56Q80VI1 Pecr-201ENSMUST00000027381 1186 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim56Q80VI1 Arpc4-203ENSMUST00000203578 1323 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Trim56Q80VI1 Gpc1-201ENSMUST00000045970 4176 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim56Q80VI1 Kcng1-201ENSMUST00000099069 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim56Q80VI1 Luc7l3-201ENSMUST00000021226 3373 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Trim56Q80VI1 Nyap1-204ENSMUST00000212152 2499 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim56Q80VI1 Slc25a19-212ENSMUST00000178003 2614 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Trim56Q80VI1 Sorbs1-208ENSMUST00000224247 2688 ntAPPRIS ALT2 BASIC17.1■□□□□ 0.33
Trim56Q80VI1 Dlat-201ENSMUST00000034567 4035 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim56Q80VI1 Prpf31-202ENSMUST00000108636 1798 ntTSL 5 BASIC17.1■□□□□ 0.33
Trim56Q80VI1 Zfp707-201ENSMUST00000109966 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim56Q80VI1 Ric8b-201ENSMUST00000038523 3069 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Trim56Q80VI1 Tomm34-202ENSMUST00000109384 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim56Q80VI1 Gpd2-202ENSMUST00000112618 5759 ntTSL 5 BASIC17.09■□□□□ 0.33
Trim56Q80VI1 Fzd5-201ENSMUST00000063982 6915 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim56Q80VI1 F420014N23Rik-201ENSMUST00000181578 2396 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Trim56Q80VI1 Ripor2-205ENSMUST00000110384 5608 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim56Q80VI1 Gli1-201ENSMUST00000026474 4057 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim56Q80VI1 Wsb1-201ENSMUST00000017821 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim56Q80VI1 Foxl1-201ENSMUST00000181609 2705 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Trim56Q80VI1 Trhde-201ENSMUST00000061632 5714 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim56Q80VI1 Nudcd2-203ENSMUST00000127382 727 ntTSL 2 BASIC17.09■□□□□ 0.33
Trim56Q80VI1 Gm13383-201ENSMUST00000131190 1171 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Trim56Q80VI1 Haghl-207ENSMUST00000140738 1194 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Trim56Q80VI1 1700110K17Rik-202ENSMUST00000156511 927 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Trim56Q80VI1 Rpl32-202ENSMUST00000203816 906 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
Trim56Q80VI1 Timm13-203ENSMUST00000218481 471 ntTSL 3 BASIC17.09■□□□□ 0.33
Trim56Q80VI1 4930408O17Rik-202ENSMUST00000222624 1131 ntTSL 5 BASIC17.09■□□□□ 0.33
Trim56Q80VI1 Shd-206ENSMUST00000225145 998 ntBASIC17.09■□□□□ 0.33
Trim56Q80VI1 Olfr975-201ENSMUST00000054067 933 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Trim56Q80VI1 Cfd-201ENSMUST00000061653 922 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim56Q80VI1 3110082I17Rik-201ENSMUST00000066052 1429 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim56Q80VI1 Rnf25-202ENSMUST00000113721 1451 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim56Q80VI1 Gm4981-201ENSMUST00000099726 1854 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Trim56Q80VI1 Htr3a-202ENSMUST00000217289 1987 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim56Q80VI1 Rnd1-201ENSMUST00000003451 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim56Q80VI1 Gm16201-202ENSMUST00000139218 2330 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Trim56Q80VI1 Grn-201ENSMUST00000049460 2340 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim56Q80VI1 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim56Q80VI1 Ppp1r3g-201ENSMUST00000132661 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim56Q80VI1 Pten-201ENSMUST00000013807 8292 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim56Q80VI1 Sh2b2-201ENSMUST00000005188 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim56Q80VI1 Sgtb-201ENSMUST00000044385 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim56Q80VI1 Kcnh4-201ENSMUST00000107361 3748 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Trim56Q80VI1 Rbm15-201ENSMUST00000061772 4343 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim56Q80VI1 Tbc1d1-203ENSMUST00000119756 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim56Q80VI1 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim56Q80VI1 Antxr2-201ENSMUST00000031281 5656 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim56Q80VI1 Plekhn1-201ENSMUST00000105569 3014 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Trim56Q80VI1 Fh1-201ENSMUST00000027810 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Trim56Q80VI1 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
Trim56Q80VI1 Tbrg4-201ENSMUST00000000394 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Trim56Q80VI1 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Trim56Q80VI1 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Trim56Q80VI1 Npnt-204ENSMUST00000117164 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Trim56Q80VI1 Gm14812-201ENSMUST00000156494 1794 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Trim56Q80VI1 Usp38-201ENSMUST00000042724 4707 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trim56Q80VI1 Zdhhc19-201ENSMUST00000064192 1323 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trim56Q80VI1 Usp33-202ENSMUST00000117492 3886 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trim56Q80VI1 Hist1h4d-201ENSMUST00000102968 1138 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
Trim56Q80VI1 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trim56Q80VI1 Hagh-202ENSMUST00000118788 1191 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trim56Q80VI1 Saa1-201ENSMUST00000128088 609 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trim56Q80VI1 Gm14206-201ENSMUST00000132973 747 ntTSL 3 BASIC17.08■□□□□ 0.32
Trim56Q80VI1 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Trim56Q80VI1 Gm15384-201ENSMUST00000138832 486 ntTSL 5 BASIC17.08■□□□□ 0.32
Trim56Q80VI1 Mir99ahg-211ENSMUST00000183099 1189 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Trim56Q80VI1 Gm38182-203ENSMUST00000192984 993 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Trim56Q80VI1 Pcdhgc5-204ENSMUST00000193941 593 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Trim56Q80VI1 Gm45453-201ENSMUST00000211758 853 ntBASIC17.08■□□□□ 0.32
Trim56Q80VI1 4930593C16Rik-202ENSMUST00000214011 714 ntTSL 5 BASIC17.08■□□□□ 0.32
Trim56Q80VI1 Gm6888-201ENSMUST00000221983 706 ntBASIC17.08■□□□□ 0.32
Trim56Q80VI1 Dupd1-202ENSMUST00000224735 548 ntBASIC17.08■□□□□ 0.32
Trim56Q80VI1 AC090659.2-201ENSMUST00000225378 1186 ntBASIC17.08■□□□□ 0.32
Trim56Q80VI1 Rnf44-211ENSMUST00000134862 3797 ntTSL 5 BASIC17.08■□□□□ 0.32
Trim56Q80VI1 Tle1-204ENSMUST00000102848 3660 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Trim56Q80VI1 Glis1-202ENSMUST00000106738 2744 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
Trim56Q80VI1 Ifnar2-202ENSMUST00000089042 2580 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trim56Q80VI1 Slc43a1-201ENSMUST00000028469 2539 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trim56Q80VI1 Eif4g1-202ENSMUST00000073840 5394 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
Trim56Q80VI1 Pde5a-204ENSMUST00000200389 7603 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
Trim56Q80VI1 Cdx4-201ENSMUST00000033689 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trim56Q80VI1 Casp8ap2-201ENSMUST00000029950 6799 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim56Q80VI1 Gtpbp3-201ENSMUST00000007754 2800 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim56Q80VI1 Gm44645-201ENSMUST00000205492 1653 ntBASIC17.07■□□□□ 0.32
Trim56Q80VI1 Camk2d-204ENSMUST00000106400 2722 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim56Q80VI1 Sowaha-201ENSMUST00000104955 3702 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Trim56Q80VI1 Ywhaq-201ENSMUST00000049531 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim56Q80VI1 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim56Q80VI1 Dclk1-211ENSMUST00000199169 1499 ntTSL 2 BASIC17.07■□□□□ 0.32
Trim56Q80VI1 Msx3-201ENSMUST00000055353 2356 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 53.7 ms