Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Rph3a-203ENSMUST00000202326 2621 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Cdx1P18111 Med22-202ENSMUST00000102899 3506 ntAPPRIS ALT1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Cdx1P18111 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Cdx1P18111 Mob4-202ENSMUST00000159311 1816 ntTSL 3 BASIC11.74□□□□□ -0.53
Cdx1P18111 D930019O06Rik-201ENSMUST00000181841 3663 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Cdx1P18111 Cacng3-201ENSMUST00000084615 2777 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Cdx1P18111 Cbarp-214ENSMUST00000169546 2980 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
Cdx1P18111 Zkscan7-202ENSMUST00000215872 4035 ntTSL 5 BASIC11.74□□□□□ -0.53
Cdx1P18111 Gm37105-201ENSMUST00000192251 2085 ntBASIC11.74□□□□□ -0.53
Cdx1P18111 Loxl2-201ENSMUST00000022660 5316 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Cdx1P18111 Cadm2-202ENSMUST00000120594 3248 ntAPPRIS ALT1 TSL 5 BASIC11.74□□□□□ -0.53
Cdx1P18111 Gm43061-201ENSMUST00000198850 2241 ntBASIC11.74□□□□□ -0.53
Cdx1P18111 C5ar1-201ENSMUST00000050770 2481 ntAPPRIS P1 TSL 3 BASIC11.74□□□□□ -0.53
Cdx1P18111 Cfap69-201ENSMUST00000054865 4956 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Cdx1P18111 Cd164l2-201ENSMUST00000105910 986 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Cdx1P18111 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC11.74□□□□□ -0.53
Cdx1P18111 Cabp2-205ENSMUST00000162908 911 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
Cdx1P18111 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC11.74□□□□□ -0.53
Cdx1P18111 Faap20-210ENSMUST00000178473 1076 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
Cdx1P18111 4930477E14Rik-201ENSMUST00000181412 621 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Cdx1P18111 Gm44202-201ENSMUST00000203549 532 ntTSL 3 BASIC11.74□□□□□ -0.53
Cdx1P18111 AC138767.1-201ENSMUST00000222661 415 ntBASIC11.74□□□□□ -0.53
Cdx1P18111 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC11.74□□□□□ -0.53
Cdx1P18111 Gm9925-201ENSMUST00000066583 483 ntAPPRIS P1 BASIC11.74□□□□□ -0.53
Cdx1P18111 Ydjc-201ENSMUST00000069064 1297 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Cdx1P18111 Zbtb49-202ENSMUST00000114113 2645 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Cdx1P18111 Elmod1-201ENSMUST00000048409 2605 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Cdx1P18111 Phactr3-202ENSMUST00000103066 2680 ntAPPRIS P4 TSL 1 (best) BASIC11.74□□□□□ -0.53
Cdx1P18111 Zfp276-201ENSMUST00000001092 4071 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Cdx1P18111 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Cdx1P18111 Gabra4-201ENSMUST00000031121 4108 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Cdx1P18111 Ssh1-204ENSMUST00000159592 8436 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Cdx1P18111 Gm8784-201ENSMUST00000222096 1435 ntBASIC11.74□□□□□ -0.53
Cdx1P18111 Gfra2-202ENSMUST00000227633 1480 ntBASIC11.74□□□□□ -0.53
Cdx1P18111 Ovol2-202ENSMUST00000103171 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Cdx1P18111 Tcf12-202ENSMUST00000183404 6299 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
Cdx1P18111 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC11.74□□□□□ -0.53
Cdx1P18111 Plekha1-201ENSMUST00000048180 3321 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Cdx1P18111 Gm44065-201ENSMUST00000203184 3527 ntBASIC11.74□□□□□ -0.53
Cdx1P18111 Rnf44-201ENSMUST00000037422 3734 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Cdx1P18111 Bcs1l-201ENSMUST00000027358 1890 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Cdx1P18111 Madd-201ENSMUST00000066420 3753 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
Cdx1P18111 Src-202ENSMUST00000092576 3887 ntTSL 5 BASIC11.74□□□□□ -0.53
Cdx1P18111 Ankrd13c-201ENSMUST00000040787 3903 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
Cdx1P18111 Rbmx-203ENSMUST00000114730 2019 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
Cdx1P18111 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC11.74□□□□□ -0.53
Cdx1P18111 Ppef2-201ENSMUST00000031359 2274 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Cdx1P18111 Gcat-201ENSMUST00000006544 2365 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Cdx1P18111 Letmd1-201ENSMUST00000037001 2579 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Cdx1P18111 Gm37861-201ENSMUST00000193534 2869 ntBASIC11.73□□□□□ -0.53
Cdx1P18111 Dzip1-202ENSMUST00000047208 4476 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
Cdx1P18111 Aptx-201ENSMUST00000030119 5250 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Cdx1P18111 Ppp4r3b-202ENSMUST00000102856 2410 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Cdx1P18111 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC11.73□□□□□ -0.53
Cdx1P18111 Tekt1-202ENSMUST00000108502 1403 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Cdx1P18111 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC11.73□□□□□ -0.53
Cdx1P18111 Stau1-204ENSMUST00000109238 2976 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Cdx1P18111 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Cdx1P18111 Gm14066-201ENSMUST00000134801 2057 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Cdx1P18111 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC11.73□□□□□ -0.53
Cdx1P18111 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC11.73□□□□□ -0.53
Cdx1P18111 Hk3-208ENSMUST00000153665 2945 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Cdx1P18111 Micu1-204ENSMUST00000165563 2442 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
Cdx1P18111 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Cdx1P18111 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Cdx1P18111 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC11.73□□□□□ -0.53
Cdx1P18111 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC11.73□□□□□ -0.53
Cdx1P18111 Gm5712-201ENSMUST00000199748 1043 ntBASIC11.73□□□□□ -0.53
Cdx1P18111 Spata33-204ENSMUST00000212346 715 ntTSL 2 BASIC11.73□□□□□ -0.53
Cdx1P18111 Il12rb1-205ENSMUST00000212657 2741 ntAPPRIS ALT2 TSL 5 BASIC11.73□□□□□ -0.53
Cdx1P18111 AC153527.1-201ENSMUST00000220412 602 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Cdx1P18111 A330040F15Rik-202ENSMUST00000224046 1918 ntBASIC11.73□□□□□ -0.53
Cdx1P18111 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC11.73□□□□□ -0.53
Cdx1P18111 AC114585.2-202ENSMUST00000228094 426 ntBASIC11.73□□□□□ -0.53
Cdx1P18111 Mindy3-201ENSMUST00000028105 2344 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Cdx1P18111 Mtfp1-201ENSMUST00000004868 1411 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Cdx1P18111 Pnoc-201ENSMUST00000059339 2157 ntAPPRIS P2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Cdx1P18111 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Cdx1P18111 Sall4-202ENSMUST00000075044 2534 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Cdx1P18111 Fam19a2-201ENSMUST00000050756 4364 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Cdx1P18111 Malt1-202ENSMUST00000224056 4028 ntAPPRIS ALT2 BASIC11.73□□□□□ -0.53
Cdx1P18111 Pank1-201ENSMUST00000036584 3460 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Cdx1P18111 Cxcr5-204ENSMUST00000215293 2846 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Cdx1P18111 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Cdx1P18111 D630023F18Rik-201ENSMUST00000050047 2180 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdx1P18111 Islr2-210ENSMUST00000215950 4109 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdx1P18111 Ube3a-216ENSMUST00000202945 3889 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Cdx1P18111 Gns-201ENSMUST00000040344 3855 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdx1P18111 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdx1P18111 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Cdx1P18111 Gm44645-201ENSMUST00000205492 1653 ntBASIC11.72□□□□□ -0.53
Cdx1P18111 Slc6a7-201ENSMUST00000025520 3342 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdx1P18111 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC11.72□□□□□ -0.53
Cdx1P18111 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Cdx1P18111 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdx1P18111 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdx1P18111 Tfap2a-202ENSMUST00000110193 2863 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdx1P18111 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdx1P18111 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdx1P18111 Ahsa1-201ENSMUST00000021425 1377 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 53.7 ms