Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Aptx-202ENSMUST00000068125 5383 ntAPPRIS P4 TSL 1 (best) BASIC14.93□□□□□ -0.02
Vps28Q9D1C8 Kdf1-203ENSMUST00000121797 2256 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
Vps28Q9D1C8 Kcnj8-201ENSMUST00000032374 2269 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Vps28Q9D1C8 Furin-203ENSMUST00000122232 4286 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Vps28Q9D1C8 Arid3a-203ENSMUST00000105377 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Vps28Q9D1C8 Medag-201ENSMUST00000093110 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Vps28Q9D1C8 Ttll3-201ENSMUST00000032414 3168 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Vps28Q9D1C8 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Vps28Q9D1C8 Aen-201ENSMUST00000107421 2007 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Vps28Q9D1C8 Agbl5-213ENSMUST00000201917 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Vps28Q9D1C8 Csgalnact2-201ENSMUST00000049344 3661 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Vps28Q9D1C8 Ppp4r4-201ENSMUST00000021631 3964 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Vps28Q9D1C8 Mir449b-201ENSMUST00000104833 80 ntBASIC14.92□□□□□ -0.02
Vps28Q9D1C8 Tex30-206ENSMUST00000133677 935 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Vps28Q9D1C8 Hpca-207ENSMUST00000139450 812 ntAPPRIS P1 TSL 3 BASIC14.92□□□□□ -0.02
Vps28Q9D1C8 2810408I11Rik-202ENSMUST00000150749 711 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Vps28Q9D1C8 Cdk2ap2-204ENSMUST00000174514 669 ntTSL 2 BASIC14.92□□□□□ -0.02
Vps28Q9D1C8 Hsf4-207ENSMUST00000174837 1251 ntTSL 5 BASIC14.92□□□□□ -0.02
Vps28Q9D1C8 Gm10253-201ENSMUST00000194270 940 ntBASIC14.92□□□□□ -0.02
Vps28Q9D1C8 1700128F08Rik-202ENSMUST00000213708 717 ntBASIC14.92□□□□□ -0.02
Vps28Q9D1C8 Mfsd2a-201ENSMUST00000030408 2151 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Vps28Q9D1C8 Rad18-202ENSMUST00000077088 2577 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
Vps28Q9D1C8 Unc5d-202ENSMUST00000209401 3081 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Vps28Q9D1C8 Unc5d-203ENSMUST00000210298 3060 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Vps28Q9D1C8 Unc5d-205ENSMUST00000211448 3087 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Vps28Q9D1C8 Dlgap1-211ENSMUST00000148486 5276 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Vps28Q9D1C8 Atg9a-208ENSMUST00000189702 4110 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
Vps28Q9D1C8 Disp2-204ENSMUST00000110846 1732 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Vps28Q9D1C8 Trappc2-203ENSMUST00000116495 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Vps28Q9D1C8 Gm16845-201ENSMUST00000180419 1415 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Vps28Q9D1C8 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Vps28Q9D1C8 Tomm70a-201ENSMUST00000166897 3778 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Vps28Q9D1C8 Rspry1-202ENSMUST00000121101 3092 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Vps28Q9D1C8 Ccnt2-202ENSMUST00000112570 4511 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Vps28Q9D1C8 Syp-201ENSMUST00000069520 2591 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Vps28Q9D1C8 Sorbs3-204ENSMUST00000227929 2460 ntBASIC14.91□□□□□ -0.02
Vps28Q9D1C8 Xylt2-201ENSMUST00000116349 3442 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Vps28Q9D1C8 Tubb3-201ENSMUST00000071134 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Vps28Q9D1C8 Gm17396-201ENSMUST00000172075 1655 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Vps28Q9D1C8 Dgkq-201ENSMUST00000053913 4938 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Vps28Q9D1C8 Fstl1-201ENSMUST00000114763 3789 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Vps28Q9D1C8 Efcab14-202ENSMUST00000106522 2636 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Vps28Q9D1C8 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Vps28Q9D1C8 Dennd1a-201ENSMUST00000102787 4342 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Vps28Q9D1C8 Tnfrsf13b-202ENSMUST00000101103 750 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Vps28Q9D1C8 Ighv4-1-201ENSMUST00000103464 414 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
Vps28Q9D1C8 Gm13616-201ENSMUST00000120600 222 ntBASIC14.91□□□□□ -0.02
Vps28Q9D1C8 4930544D05Rik-203ENSMUST00000144960 624 ntAPPRIS P2 TSL 5 BASIC14.91□□□□□ -0.02
Vps28Q9D1C8 Tmem33-206ENSMUST00000162543 664 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Vps28Q9D1C8 Gm42560-201ENSMUST00000201216 1023 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Vps28Q9D1C8 Lce1g-201ENSMUST00000029527 925 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Vps28Q9D1C8 Celf5-203ENSMUST00000120508 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Vps28Q9D1C8 Gpd1l-204ENSMUST00000146623 4391 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Vps28Q9D1C8 Chtf18-201ENSMUST00000048054 3214 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Vps28Q9D1C8 Cyp4f18-201ENSMUST00000003574 1702 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Vps28Q9D1C8 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Vps28Q9D1C8 P4ha2-202ENSMUST00000093107 2263 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Vps28Q9D1C8 Ppp1r18-204ENSMUST00000144382 2536 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Vps28Q9D1C8 Arhgap44-201ENSMUST00000047463 4074 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Vps28Q9D1C8 Fgf17-202ENSMUST00000227123 1336 ntBASIC14.91□□□□□ -0.02
Vps28Q9D1C8 Tpm1-209ENSMUST00000113690 2890 ntTSL 3 BASIC14.91□□□□□ -0.02
Vps28Q9D1C8 Phf12-201ENSMUST00000049167 4410 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Vps28Q9D1C8 Tmem9b-202ENSMUST00000118571 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Vps28Q9D1C8 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC14.9□□□□□ -0.02
Vps28Q9D1C8 Coasy-201ENSMUST00000001806 2138 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Vps28Q9D1C8 Adgrl1-210ENSMUST00000152978 5734 ntTSL 5 BASIC14.9□□□□□ -0.02
Vps28Q9D1C8 Klf15-203ENSMUST00000203039 2482 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
Vps28Q9D1C8 Uck2-202ENSMUST00000053686 4731 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Vps28Q9D1C8 Spryd4-201ENSMUST00000061995 1583 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Vps28Q9D1C8 Ddx20-201ENSMUST00000090680 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Vps28Q9D1C8 Snx8-205ENSMUST00000196566 1914 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
Vps28Q9D1C8 G630022F23Rik-201ENSMUST00000202923 3627 ntBASIC14.9□□□□□ -0.02
Vps28Q9D1C8 Myog-201ENSMUST00000027730 1495 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Vps28Q9D1C8 Rest-202ENSMUST00000113449 6924 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Vps28Q9D1C8 Atf7ip2-203ENSMUST00000117220 1230 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Vps28Q9D1C8 Gm25948-201ENSMUST00000175334 112 ntBASIC14.9□□□□□ -0.02
Vps28Q9D1C8 1700086L19Rik-202ENSMUST00000185822 1028 ntTSL 3 BASIC14.9□□□□□ -0.02
Vps28Q9D1C8 4930593A02Rik-202ENSMUST00000203879 938 ntTSL 5 BASIC14.9□□□□□ -0.02
Vps28Q9D1C8 AC139382.1-201ENSMUST00000221402 498 ntBASIC14.9□□□□□ -0.02
Vps28Q9D1C8 Rps10-201ENSMUST00000025052 519 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Vps28Q9D1C8 Nacc2-201ENSMUST00000028300 6378 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Vps28Q9D1C8 Tmod4-201ENSMUST00000005769 1242 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Vps28Q9D1C8 2610318N02Rik-201ENSMUST00000093336 1265 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Vps28Q9D1C8 Gjb3-202ENSMUST00000106091 1623 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Vps28Q9D1C8 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Vps28Q9D1C8 Gldn-201ENSMUST00000056740 4658 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Vps28Q9D1C8 Fgfr2-207ENSMUST00000117872 4223 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Vps28Q9D1C8 Hipk3-202ENSMUST00000111124 4125 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
Vps28Q9D1C8 Orai3-203ENSMUST00000121504 2141 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Vps28Q9D1C8 Hcfc2-201ENSMUST00000020478 3422 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
Vps28Q9D1C8 Ano8-201ENSMUST00000093450 3653 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Vps28Q9D1C8 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Vps28Q9D1C8 Rhot1-202ENSMUST00000055056 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Vps28Q9D1C8 Farp2-201ENSMUST00000120301 3937 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Vps28Q9D1C8 Kirrel-202ENSMUST00000107618 7278 ntAPPRIS P2 TSL 5 BASIC14.9□□□□□ -0.02
Vps28Q9D1C8 Cgn-202ENSMUST00000107273 5016 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
Vps28Q9D1C8 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Vps28Q9D1C8 Rab3a-202ENSMUST00000110090 1375 ntAPPRIS P1 TSL 3 BASIC14.89□□□□□ -0.03
Vps28Q9D1C8 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Vps28Q9D1C8 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 22.8 ms