Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Cdk6-201ENSMUST00000042410 2470 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ddx56Q9D0R4 Asic3-201ENSMUST00000049346 1853 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Ddx56Q9D0R4 Ldlrap1-201ENSMUST00000037828 6549 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ddx56Q9D0R4 Slc4a7-201ENSMUST00000057015 8132 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ddx56Q9D0R4 Slc16a9-201ENSMUST00000046807 3756 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ddx56Q9D0R4 Kcnh4-201ENSMUST00000107361 3748 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Ddx56Q9D0R4 Fgfr1op-202ENSMUST00000097419 3505 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ddx56Q9D0R4 Cnksr2-202ENSMUST00000112513 4471 ntTSL 5 BASIC15.29■□□□□ 0.04
Ddx56Q9D0R4 Nacc2-201ENSMUST00000028300 6378 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ddx56Q9D0R4 Id2-202ENSMUST00000221761 1969 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Ddx56Q9D0R4 Gm10457-201ENSMUST00000222619 1906 ntTSL 2 BASIC15.29■□□□□ 0.04
Ddx56Q9D0R4 Zmym3-208ENSMUST00000121429 1890 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Ddx56Q9D0R4 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ddx56Q9D0R4 Drd5-201ENSMUST00000041646 3152 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
Ddx56Q9D0R4 Commd10-201ENSMUST00000049388 1561 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ddx56Q9D0R4 Spryd4-201ENSMUST00000061995 1583 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ddx56Q9D0R4 Cask-204ENSMUST00000115438 8366 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Ddx56Q9D0R4 Anks1b-213ENSMUST00000182284 2607 ntTSL 5 BASIC15.29■□□□□ 0.04
Ddx56Q9D0R4 Gm5934-201ENSMUST00000120734 2588 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Ddx56Q9D0R4 Oprl1-203ENSMUST00000108766 1241 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Ddx56Q9D0R4 Rabepk-202ENSMUST00000113086 1106 ntTSL 5 BASIC15.29■□□□□ 0.04
Ddx56Q9D0R4 U2af1l4-216ENSMUST00000166510 835 ntTSL 5 BASIC15.29■□□□□ 0.04
Ddx56Q9D0R4 Rpsa-ps1-201ENSMUST00000191040 886 ntBASIC15.29■□□□□ 0.04
Ddx56Q9D0R4 Gm38554-201ENSMUST00000201639 708 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Ddx56Q9D0R4 AC121788.1-202ENSMUST00000218801 871 ntTSL 5 BASIC15.29■□□□□ 0.04
Ddx56Q9D0R4 Vcan-205ENSMUST00000159337 2273 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Ddx56Q9D0R4 Flrt2-202ENSMUST00000110117 3223 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ddx56Q9D0R4 Aggf1-201ENSMUST00000022189 3249 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ddx56Q9D0R4 Wac-201ENSMUST00000074919 3070 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Ddx56Q9D0R4 Tsc22d1-202ENSMUST00000048371 4818 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Ddx56Q9D0R4 Pglyrp2-201ENSMUST00000114455 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ddx56Q9D0R4 Sox21-201ENSMUST00000170662 3799 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
Ddx56Q9D0R4 Fzd7-201ENSMUST00000114246 4532 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
Ddx56Q9D0R4 Gm45760-201ENSMUST00000212190 1782 ntBASIC15.29■□□□□ 0.04
Ddx56Q9D0R4 Gm4793-201ENSMUST00000067468 2616 ntTSL 2 BASIC15.29■□□□□ 0.04
Ddx56Q9D0R4 Ubn2-201ENSMUST00000039127 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ddx56Q9D0R4 Gm9252-201ENSMUST00000172364 1602 ntBASIC15.28■□□□□ 0.04
Ddx56Q9D0R4 Pth2r-201ENSMUST00000027083 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ddx56Q9D0R4 Foxa1-201ENSMUST00000044380 3191 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ddx56Q9D0R4 Gjb1-203ENSMUST00000119190 1585 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
Ddx56Q9D0R4 Arl5b-202ENSMUST00000069870 6981 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ddx56Q9D0R4 Espn-220ENSMUST00000207676 4618 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Ddx56Q9D0R4 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ddx56Q9D0R4 Kdm6b-201ENSMUST00000094077 6654 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Ddx56Q9D0R4 Ifnz-201ENSMUST00000105144 1462 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
Ddx56Q9D0R4 Gm16845-201ENSMUST00000180419 1415 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Ddx56Q9D0R4 Wbscr25-202ENSMUST00000148729 2075 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Ddx56Q9D0R4 Slc39a14-201ENSMUST00000022688 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ddx56Q9D0R4 Mapk8-201ENSMUST00000022504 2587 ntAPPRIS P5 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ddx56Q9D0R4 Gm4913-201ENSMUST00000117075 1290 ntBASIC15.28■□□□□ 0.04
Ddx56Q9D0R4 Ercc8-202ENSMUST00000120672 1144 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Ddx56Q9D0R4 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC15.28■□□□□ 0.04
Ddx56Q9D0R4 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Ddx56Q9D0R4 AC131187.1-201ENSMUST00000224567 809 ntBASIC15.28■□□□□ 0.04
Ddx56Q9D0R4 Lrrc26-201ENSMUST00000028337 1190 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ddx56Q9D0R4 1700086L19Rik-201ENSMUST00000095617 706 ntBASIC15.28■□□□□ 0.04
Ddx56Q9D0R4 Afg3l2-201ENSMUST00000025408 3085 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ddx56Q9D0R4 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
Ddx56Q9D0R4 Ppp1r3g-201ENSMUST00000132661 2361 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ddx56Q9D0R4 Hic1-201ENSMUST00000055619 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ddx56Q9D0R4 Olfr317-202ENSMUST00000215513 2769 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Ddx56Q9D0R4 Arhgef12-202ENSMUST00000165665 10752 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ddx56Q9D0R4 A930004D18Rik-201ENSMUST00000066163 3217 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ddx56Q9D0R4 Mms22l-201ENSMUST00000050446 4261 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Ddx56Q9D0R4 Cald1-201ENSMUST00000031775 2142 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Ddx56Q9D0R4 Rgs3-201ENSMUST00000065870 4698 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Ddx56Q9D0R4 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC15.27■□□□□ 0.04
Ddx56Q9D0R4 Pcdha1-201ENSMUST00000070797 5248 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Ddx56Q9D0R4 Lims2-201ENSMUST00000025254 1870 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Ddx56Q9D0R4 Islr2-210ENSMUST00000215950 4109 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
Ddx56Q9D0R4 Arpin-201ENSMUST00000048731 2277 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Ddx56Q9D0R4 Nrn1-204ENSMUST00000224323 1779 ntBASIC15.27■□□□□ 0.04
Ddx56Q9D0R4 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Ddx56Q9D0R4 Dcp1b-201ENSMUST00000073909 1748 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Ddx56Q9D0R4 Qdpr-204ENSMUST00000120867 1234 ntTSL 5 BASIC15.27■□□□□ 0.04
Ddx56Q9D0R4 Cdkn1a-203ENSMUST00000122348 857 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Ddx56Q9D0R4 Rps10-ps2-201ENSMUST00000127484 496 ntBASIC15.27■□□□□ 0.04
Ddx56Q9D0R4 Klrg2-202ENSMUST00000201345 1225 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
Ddx56Q9D0R4 9930104L06Rik-201ENSMUST00000094769 2911 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Ddx56Q9D0R4 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
Ddx56Q9D0R4 Pgap2-225ENSMUST00000156529 2034 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Ddx56Q9D0R4 AC140354.1-201ENSMUST00000219499 2425 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Ddx56Q9D0R4 Samhd1-202ENSMUST00000088523 1996 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
Ddx56Q9D0R4 Pcdha11-202ENSMUST00000115657 5360 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Ddx56Q9D0R4 Loxl2-201ENSMUST00000022660 5316 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Ddx56Q9D0R4 Pld3-201ENSMUST00000117095 2282 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Ddx56Q9D0R4 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
Ddx56Q9D0R4 Arid5a-201ENSMUST00000097778 2270 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Ddx56Q9D0R4 Vav1-201ENSMUST00000005889 2963 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
Ddx56Q9D0R4 Sem1-201ENSMUST00000041111 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Ddx56Q9D0R4 Gpr137-205ENSMUST00000166115 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Ddx56Q9D0R4 Pcp2-202ENSMUST00000128566 1447 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
Ddx56Q9D0R4 Sbk2-205ENSMUST00000208109 1422 ntTSL 5 BASIC15.26■□□□□ 0.03
Ddx56Q9D0R4 Fars2-208ENSMUST00000224611 1750 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Ddx56Q9D0R4 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Ddx56Q9D0R4 Zfp36-202ENSMUST00000209061 2465 ntAPPRIS ALT2 BASIC15.26■□□□□ 0.03
Ddx56Q9D0R4 Hsp90b1-201ENSMUST00000020238 2825 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Ddx56Q9D0R4 Bag6-202ENSMUST00000166426 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Ddx56Q9D0R4 Chd4-201ENSMUST00000056889 6697 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Ddx56Q9D0R4 Kctd14-204ENSMUST00000205577 2310 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 45.8 ms