Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Mapk8ip1-202ENSMUST00000111279 3274 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ushbp1Q8R370 Zmym3-201ENSMUST00000063577 6057 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ushbp1Q8R370 Caprin2-201ENSMUST00000072324 2952 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Ushbp1Q8R370 Baz1b-201ENSMUST00000002825 6492 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ushbp1Q8R370 Cchcr1-201ENSMUST00000045956 2748 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ushbp1Q8R370 Irf3-201ENSMUST00000003284 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ushbp1Q8R370 Hectd2-201ENSMUST00000047247 4731 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ushbp1Q8R370 Ggh-201ENSMUST00000098242 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ushbp1Q8R370 Gm4793-201ENSMUST00000067468 2616 ntTSL 2 BASIC16.3■□□□□ 0.2
Ushbp1Q8R370 Syp-201ENSMUST00000069520 2591 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ushbp1Q8R370 Hist1h1e-201ENSMUST00000062045 1930 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Ushbp1Q8R370 Trav3-1-201ENSMUST00000103569 385 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Ushbp1Q8R370 Trav3-4-201ENSMUST00000103670 458 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Ushbp1Q8R370 Mafg-203ENSMUST00000106181 840 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
Ushbp1Q8R370 Gm9385-201ENSMUST00000117563 472 ntBASIC16.3■□□□□ 0.2
Ushbp1Q8R370 Zfp715-201ENSMUST00000012796 907 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Ushbp1Q8R370 Gm11201-201ENSMUST00000143473 701 ntTSL 3 BASIC16.3■□□□□ 0.2
Ushbp1Q8R370 2810047C21Rik1-201ENSMUST00000172930 915 ntBASIC16.3■□□□□ 0.2
Ushbp1Q8R370 Gm26854-201ENSMUST00000180418 705 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Ushbp1Q8R370 Gm7774-201ENSMUST00000200064 533 ntBASIC16.3■□□□□ 0.2
Ushbp1Q8R370 Rab33a-201ENSMUST00000033430 1158 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ushbp1Q8R370 Tst-201ENSMUST00000058659 1096 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ushbp1Q8R370 Rpl10-ps2-201ENSMUST00000098432 645 ntBASIC16.3■□□□□ 0.2
Ushbp1Q8R370 Kif21a-201ENSMUST00000067205 6307 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ushbp1Q8R370 Pid1-207ENSMUST00000177458 2521 ntTSL 2 BASIC16.3■□□□□ 0.2
Ushbp1Q8R370 Cdc42ep1-201ENSMUST00000059619 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ushbp1Q8R370 Tomm70a-201ENSMUST00000166897 3778 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ushbp1Q8R370 Fam8a1-201ENSMUST00000099547 3664 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ushbp1Q8R370 Fam189b-203ENSMUST00000119707 2415 ntTSL 5 BASIC16.3■□□□□ 0.2
Ushbp1Q8R370 Ppp2r1a-201ENSMUST00000007708 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ushbp1Q8R370 Tcf21-202ENSMUST00000218002 1788 ntBASIC16.3■□□□□ 0.2
Ushbp1Q8R370 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Ushbp1Q8R370 Med22-202ENSMUST00000102899 3506 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ushbp1Q8R370 Rexo4-201ENSMUST00000064244 2281 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ushbp1Q8R370 Tsc22d4-203ENSMUST00000100540 2730 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Ushbp1Q8R370 Aldh16a1-201ENSMUST00000107815 2685 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Ushbp1Q8R370 Gfod1-201ENSMUST00000055341 6928 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ushbp1Q8R370 Pbx3-201ENSMUST00000040638 2587 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ushbp1Q8R370 Shank1-202ENSMUST00000107935 6649 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Ushbp1Q8R370 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ushbp1Q8R370 Ablim3-201ENSMUST00000049378 4532 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ushbp1Q8R370 Gigyf1-201ENSMUST00000031727 5440 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ushbp1Q8R370 CT025626.1-201ENSMUST00000223735 1455 ntBASIC16.29■□□□□ 0.2
Ushbp1Q8R370 Zfp612-202ENSMUST00000212754 4863 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ushbp1Q8R370 Gm10110-201ENSMUST00000081204 1891 ntTSL 5 BASIC16.29■□□□□ 0.2
Ushbp1Q8R370 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC16.29■□□□□ 0.2
Ushbp1Q8R370 Kctd14-204ENSMUST00000205577 2310 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ushbp1Q8R370 Rgs3-204ENSMUST00000107420 2752 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Ushbp1Q8R370 Syne3-201ENSMUST00000067005 5097 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ushbp1Q8R370 Pcyt1a-202ENSMUST00000104893 4951 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Ushbp1Q8R370 Mbtps2-201ENSMUST00000058098 4797 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Ushbp1Q8R370 Vps53-204ENSMUST00000129256 650 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Ushbp1Q8R370 2410006H16Rik-201ENSMUST00000131787 462 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Ushbp1Q8R370 Gm14493-201ENSMUST00000141174 543 ntTSL 5 BASIC16.29■□□□□ 0.2
Ushbp1Q8R370 2410080I02Rik-201ENSMUST00000142712 414 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Ushbp1Q8R370 Gm26935-201ENSMUST00000182686 519 ntTSL 5 BASIC16.29■□□□□ 0.2
Ushbp1Q8R370 Gm5745-201ENSMUST00000183748 313 ntBASIC16.29■□□□□ 0.2
Ushbp1Q8R370 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ushbp1Q8R370 Gm34030-202ENSMUST00000211434 1126 ntTSL 5 BASIC16.29■□□□□ 0.2
Ushbp1Q8R370 G0s2-201ENSMUST00000009777 871 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ushbp1Q8R370 Mok-202ENSMUST00000070565 1693 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ushbp1Q8R370 Eif4g1-201ENSMUST00000044783 5444 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ushbp1Q8R370 Wbscr25-202ENSMUST00000148729 2075 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Ushbp1Q8R370 P4ha2-215ENSMUST00000174616 2094 ntTSL 5 BASIC16.29■□□□□ 0.2
Ushbp1Q8R370 Cblb-201ENSMUST00000114471 6648 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ushbp1Q8R370 Ythdc2-201ENSMUST00000037763 7215 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ushbp1Q8R370 Notch3-201ENSMUST00000087723 8044 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ushbp1Q8R370 Nkx6-1-201ENSMUST00000044125 3138 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ushbp1Q8R370 Brix1-201ENSMUST00000022855 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ushbp1Q8R370 Slc25a34-201ENSMUST00000038661 2670 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ushbp1Q8R370 Csad-201ENSMUST00000023805 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ushbp1Q8R370 Ttc24-201ENSMUST00000050258 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ushbp1Q8R370 Sptlc1-201ENSMUST00000021920 2606 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ushbp1Q8R370 Tubb3-201ENSMUST00000071134 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ushbp1Q8R370 Rnd1-201ENSMUST00000003451 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ushbp1Q8R370 Gm11738-201ENSMUST00000134069 2158 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Ushbp1Q8R370 Fgfr3-203ENSMUST00000114411 4225 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Ushbp1Q8R370 Tsc22d2-201ENSMUST00000099090 9799 ntAPPRIS P3 TSL 3 BASIC16.28■□□□□ 0.2
Ushbp1Q8R370 AI606473-201ENSMUST00000177201 1731 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Ushbp1Q8R370 Rhoj-202ENSMUST00000118602 2396 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Ushbp1Q8R370 Mcidas-201ENSMUST00000092089 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ushbp1Q8R370 Rassf5-203ENSMUST00000112442 3388 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Ushbp1Q8R370 8430429K09Rik-204ENSMUST00000146456 1675 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Ushbp1Q8R370 Ppp1r1a-201ENSMUST00000023133 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ushbp1Q8R370 Fundc1-201ENSMUST00000026016 1983 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ushbp1Q8R370 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ushbp1Q8R370 Hykk-201ENSMUST00000039742 5110 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ushbp1Q8R370 Hist1h3e-201ENSMUST00000105107 836 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Ushbp1Q8R370 Park7-204ENSMUST00000105675 882 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Ushbp1Q8R370 Fbxo44-202ENSMUST00000105705 1034 ntTSL 2 BASIC16.28■□□□□ 0.2
Ushbp1Q8R370 Gm11515-201ENSMUST00000150818 701 ntTSL 2 BASIC16.28■□□□□ 0.2
Ushbp1Q8R370 Ly6g6e-204ENSMUST00000172959 501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ushbp1Q8R370 Gm27430-201ENSMUST00000184585 107 ntBASIC16.28■□□□□ 0.2
Ushbp1Q8R370 Gm44333-201ENSMUST00000197168 107 ntBASIC16.28■□□□□ 0.2
Ushbp1Q8R370 Prss29-201ENSMUST00000024993 1178 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ushbp1Q8R370 Pde6g-201ENSMUST00000026452 900 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ushbp1Q8R370 Khk-201ENSMUST00000031053 1257 ntTSL 5 BASIC16.28■□□□□ 0.2
Ushbp1Q8R370 Spsb2-201ENSMUST00000047760 1213 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ushbp1Q8R370 Cyhr1-201ENSMUST00000066677 1163 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Ushbp1Q8R370 Gm10073-201ENSMUST00000073722 496 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 30.1 ms