Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Dsg2-202ENSMUST00000120102 3590 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Usp40Q8BWR4 Gatm-201ENSMUST00000028624 2389 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Usp40Q8BWR4 P2rx3-202ENSMUST00000111613 1764 ntAPPRIS ALT1 TSL 5 BASIC19.87■□□□□ 0.77
Usp40Q8BWR4 Ralb-201ENSMUST00000004565 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Usp40Q8BWR4 Faf1-201ENSMUST00000102724 4468 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Usp40Q8BWR4 C330018A13Rik-201ENSMUST00000127792 1599 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Usp40Q8BWR4 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC19.86■□□□□ 0.77
Usp40Q8BWR4 Lrig2-207ENSMUST00000199070 5991 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Usp40Q8BWR4 Ccdc88b-201ENSMUST00000113440 4959 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Usp40Q8BWR4 Fbxo44-205ENSMUST00000151127 1403 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Usp40Q8BWR4 Dusp23-201ENSMUST00000027826 1410 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Usp40Q8BWR4 Wdr26-207ENSMUST00000162819 6619 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Usp40Q8BWR4 Eif4g3-202ENSMUST00000084214 6139 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Usp40Q8BWR4 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Usp40Q8BWR4 Zkscan3-208ENSMUST00000224820 5398 ntBASIC19.86■□□□□ 0.77
Usp40Q8BWR4 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Usp40Q8BWR4 Casp8-201ENSMUST00000027189 2585 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
Usp40Q8BWR4 Gm15393-201ENSMUST00000120499 219 ntBASIC19.86■□□□□ 0.77
Usp40Q8BWR4 Ggnbp2-213ENSMUST00000172405 2950 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Usp40Q8BWR4 Gm31326-201ENSMUST00000191856 1048 ntBASIC19.86■□□□□ 0.77
Usp40Q8BWR4 Coq7-205ENSMUST00000209146 799 ntTSL 3 BASIC19.86■□□□□ 0.77
Usp40Q8BWR4 Tmem253-203ENSMUST00000227295 704 ntAPPRIS ALT2 BASIC19.86■□□□□ 0.77
Usp40Q8BWR4 Uqcr10-201ENSMUST00000058407 434 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Usp40Q8BWR4 Antxr2-201ENSMUST00000031281 5656 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Usp40Q8BWR4 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
Usp40Q8BWR4 Myl12a-206ENSMUST00000148960 1937 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Usp40Q8BWR4 Alox8-202ENSMUST00000094078 1947 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
Usp40Q8BWR4 Nfix-203ENSMUST00000109762 2261 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Usp40Q8BWR4 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Usp40Q8BWR4 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Usp40Q8BWR4 Actl7b-201ENSMUST00000095080 1439 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
Usp40Q8BWR4 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp40Q8BWR4 Klhl29-201ENSMUST00000020958 7041 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp40Q8BWR4 Zfp691-204ENSMUST00000179290 1721 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp40Q8BWR4 Fggy-203ENSMUST00000107091 1395 ntTSL 5 BASIC19.85■□□□□ 0.77
Usp40Q8BWR4 Iqcm-201ENSMUST00000034033 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp40Q8BWR4 Cdcp1-201ENSMUST00000039229 5310 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp40Q8BWR4 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp40Q8BWR4 Nanos1-201ENSMUST00000088237 3927 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
Usp40Q8BWR4 Gfpt1-203ENSMUST00000113657 1200 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Usp40Q8BWR4 Gm26515-201ENSMUST00000181141 996 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Usp40Q8BWR4 Gm6745-201ENSMUST00000199216 526 ntBASIC19.85■□□□□ 0.77
Usp40Q8BWR4 AC158987.1-201ENSMUST00000214586 961 ntTSL 5 BASIC19.85■□□□□ 0.77
Usp40Q8BWR4 AC159619.3-201ENSMUST00000222694 473 ntTSL 5 BASIC19.85■□□□□ 0.77
Usp40Q8BWR4 Rpp21-201ENSMUST00000025319 729 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp40Q8BWR4 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp40Q8BWR4 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC19.85■□□□□ 0.77
Usp40Q8BWR4 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp40Q8BWR4 Ptbp3-205ENSMUST00000148331 2016 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
Usp40Q8BWR4 Il18r1-204ENSMUST00000193391 1738 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Usp40Q8BWR4 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC19.85■□□□□ 0.77
Usp40Q8BWR4 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp40Q8BWR4 Gm37305-201ENSMUST00000195714 4279 ntBASIC19.85■□□□□ 0.77
Usp40Q8BWR4 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
Usp40Q8BWR4 Papolb-201ENSMUST00000099400 4239 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
Usp40Q8BWR4 Camk2g-217ENSMUST00000226630 1937 ntBASIC19.84■□□□□ 0.77
Usp40Q8BWR4 Mapk7-201ENSMUST00000079080 3019 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp40Q8BWR4 Spcs2-210ENSMUST00000209032 1610 ntTSL 5 BASIC19.84■□□□□ 0.77
Usp40Q8BWR4 Antxr1-205ENSMUST00000205033 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp40Q8BWR4 F420014N23Rik-201ENSMUST00000181578 2396 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Usp40Q8BWR4 Hsf4-206ENSMUST00000173859 1576 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Usp40Q8BWR4 Abl1-201ENSMUST00000028190 5794 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp40Q8BWR4 Zfp707-201ENSMUST00000109966 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp40Q8BWR4 Prrx2-202ENSMUST00000113592 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp40Q8BWR4 Mrps17-202ENSMUST00000118420 843 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
Usp40Q8BWR4 Gm15957-201ENSMUST00000118893 974 ntBASIC19.84■□□□□ 0.77
Usp40Q8BWR4 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC19.84■□□□□ 0.77
Usp40Q8BWR4 Gm13134-202ENSMUST00000144347 387 ntTSL 2 BASIC19.84■□□□□ 0.77
Usp40Q8BWR4 Gm16000-201ENSMUST00000146657 447 ntTSL 2 BASIC19.84■□□□□ 0.77
Usp40Q8BWR4 4930478K11Rik-201ENSMUST00000181875 715 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Usp40Q8BWR4 Gm28942-201ENSMUST00000186334 365 ntTSL 3 BASIC19.84■□□□□ 0.77
Usp40Q8BWR4 Gm28631-201ENSMUST00000190740 334 ntBASIC19.84■□□□□ 0.77
Usp40Q8BWR4 AC153872.1-201ENSMUST00000199539 128 ntBASIC19.84■□□□□ 0.77
Usp40Q8BWR4 Tbc1d17-209ENSMUST00000207293 692 ntTSL 3 BASIC19.84■□□□□ 0.77
Usp40Q8BWR4 Prrg2-207ENSMUST00000210500 922 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
Usp40Q8BWR4 Gm45668-201ENSMUST00000211271 493 ntBASIC19.84■□□□□ 0.77
Usp40Q8BWR4 AC165157.4-201ENSMUST00000220587 139 ntBASIC19.84■□□□□ 0.77
Usp40Q8BWR4 AC154806.6-201ENSMUST00000228192 202 ntBASIC19.84■□□□□ 0.77
Usp40Q8BWR4 2610528J11Rik-201ENSMUST00000030261 958 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp40Q8BWR4 Hist1h3b-201ENSMUST00000091703 620 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
Usp40Q8BWR4 Odf3l2-201ENSMUST00000095464 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp40Q8BWR4 Rwdd2b-201ENSMUST00000039101 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp40Q8BWR4 Pdia3-201ENSMUST00000028683 2770 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp40Q8BWR4 Rnf207-201ENSMUST00000076183 2466 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp40Q8BWR4 Sesn3-207ENSMUST00000209187 1700 ntTSL 5 BASIC19.84■□□□□ 0.77
Usp40Q8BWR4 Myg1-202ENSMUST00000113682 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp40Q8BWR4 Sem1-201ENSMUST00000041111 1472 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp40Q8BWR4 Map2k7-211ENSMUST00000145165 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp40Q8BWR4 Nhsl1-209ENSMUST00000207038 4854 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
Usp40Q8BWR4 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
Usp40Q8BWR4 Enpp6-202ENSMUST00000119686 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
Usp40Q8BWR4 6430573F11Rik-205ENSMUST00000171777 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Usp40Q8BWR4 Opn5-201ENSMUST00000068355 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Usp40Q8BWR4 Bard1-201ENSMUST00000027393 5659 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Usp40Q8BWR4 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Usp40Q8BWR4 Phospho2-202ENSMUST00000112266 2194 ntAPPRIS P1 TSL 3 BASIC19.83■□□□□ 0.77
Usp40Q8BWR4 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
Usp40Q8BWR4 Spaca3-202ENSMUST00000103223 947 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Usp40Q8BWR4 Hoxa7-203ENSMUST00000140316 643 ntTSL 3 BASIC19.83■□□□□ 0.77
Usp40Q8BWR4 2210408F21Rik-214ENSMUST00000155345 1022 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 30.3 ms