Protein–RNA interactions for Protein: Q811S7

Ubp1, Upstream-binding protein 1, mousemouse

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubp1Q811S7 Mfsd2a-201ENSMUST00000030408 2151 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ubp1Q811S7 Cttn-202ENSMUST00000103079 3286 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ubp1Q811S7 Trav3-1-201ENSMUST00000103569 385 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Ubp1Q811S7 Trav3-4-201ENSMUST00000103670 458 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Ubp1Q811S7 Fbxo44-202ENSMUST00000105705 1034 ntTSL 2 BASIC14.35□□□□□ -0.11
Ubp1Q811S7 Tmsb4x-201ENSMUST00000112172 768 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ubp1Q811S7 Crybb3-202ENSMUST00000117143 749 ntAPPRIS P1 TSL 3 BASIC14.35□□□□□ -0.11
Ubp1Q811S7 Gm17613-201ENSMUST00000138893 669 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Ubp1Q811S7 Trip6-203ENSMUST00000199121 366 ntTSL 3 BASIC14.35□□□□□ -0.11
Ubp1Q811S7 Klrg2-202ENSMUST00000201345 1225 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Ubp1Q811S7 Rph3al-202ENSMUST00000066504 988 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ubp1Q811S7 Atad3aos-201ENSMUST00000067628 971 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Ubp1Q811S7 Pnma1-201ENSMUST00000061425 2359 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Ubp1Q811S7 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ubp1Q811S7 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC14.35□□□□□ -0.11
Ubp1Q811S7 Dagla-201ENSMUST00000039327 5634 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Ubp1Q811S7 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Ubp1Q811S7 Gm17108-201ENSMUST00000168625 2877 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Ubp1Q811S7 Syn2-201ENSMUST00000009538 2708 ntAPPRIS P4 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ubp1Q811S7 Itfg1-201ENSMUST00000034140 3306 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ubp1Q811S7 Gm45133-201ENSMUST00000207548 2773 ntBASIC14.34□□□□□ -0.11
Ubp1Q811S7 Klf4-201ENSMUST00000107619 3029 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ubp1Q811S7 Ece2-204ENSMUST00000133344 3042 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ubp1Q811S7 Csnk1d-201ENSMUST00000018274 3675 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ubp1Q811S7 Adam23-204ENSMUST00000114103 2655 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Ubp1Q811S7 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ubp1Q811S7 Chaf1b-202ENSMUST00000117099 1894 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Ubp1Q811S7 Ghr-201ENSMUST00000069451 4175 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ubp1Q811S7 Ccnj-202ENSMUST00000119316 3763 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Ubp1Q811S7 Phtf2-201ENSMUST00000118174 4840 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ubp1Q811S7 Lpar5-203ENSMUST00000171989 1458 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
Ubp1Q811S7 Inha-201ENSMUST00000037330 1475 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ubp1Q811S7 Gm8749-201ENSMUST00000117737 331 ntBASIC14.34□□□□□ -0.11
Ubp1Q811S7 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC14.34□□□□□ -0.11
Ubp1Q811S7 Mmab-203ENSMUST00000123256 1277 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Ubp1Q811S7 Gm18889-201ENSMUST00000174284 929 ntBASIC14.34□□□□□ -0.11
Ubp1Q811S7 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Ubp1Q811S7 Gm4691-201ENSMUST00000182339 1000 ntBASIC14.34□□□□□ -0.11
Ubp1Q811S7 Gm44335-201ENSMUST00000196879 141 ntBASIC14.34□□□□□ -0.11
Ubp1Q811S7 Gm44297-201ENSMUST00000198304 141 ntBASIC14.34□□□□□ -0.11
Ubp1Q811S7 Gm44346-201ENSMUST00000198851 141 ntBASIC14.34□□□□□ -0.11
Ubp1Q811S7 Gm2451-201ENSMUST00000199447 999 ntBASIC14.34□□□□□ -0.11
Ubp1Q811S7 Gm10290-201ENSMUST00000200451 999 ntBASIC14.34□□□□□ -0.11
Ubp1Q811S7 Slc12a5-208ENSMUST00000202479 1202 ntTSL 5 BASIC14.34□□□□□ -0.11
Ubp1Q811S7 Cdipt-205ENSMUST00000206450 951 ntTSL 5 BASIC14.34□□□□□ -0.11
Ubp1Q811S7 Ndufs6-203ENSMUST00000222930 512 ntTSL 3 BASIC14.34□□□□□ -0.11
Ubp1Q811S7 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ubp1Q811S7 Wdr73-201ENSMUST00000026816 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ubp1Q811S7 Epc1-202ENSMUST00000050542 565 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Ubp1Q811S7 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ubp1Q811S7 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ubp1Q811S7 Atp2c2-201ENSMUST00000095171 3222 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ubp1Q811S7 Bbx-204ENSMUST00000114477 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ubp1Q811S7 Zfp57-202ENSMUST00000089968 1991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ubp1Q811S7 Rbfox3-205ENSMUST00000117731 3084 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ubp1Q811S7 Gm3139-202ENSMUST00000201138 1303 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Ubp1Q811S7 Gm3183-203ENSMUST00000202911 1303 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ubp1Q811S7 Ube2l6-201ENSMUST00000102642 1560 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ubp1Q811S7 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC14.34□□□□□ -0.11
Ubp1Q811S7 Luc7l3-201ENSMUST00000021226 3373 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Ubp1Q811S7 Egfl7-212ENSMUST00000166920 1391 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ubp1Q811S7 Pcsk4-201ENSMUST00000020340 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ubp1Q811S7 Nsun7-203ENSMUST00000201100 2775 ntAPPRIS P3 TSL 5 BASIC14.34□□□□□ -0.11
Ubp1Q811S7 BC026585-201ENSMUST00000046743 1618 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Ubp1Q811S7 Ptprv-210ENSMUST00000183317 6108 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
Ubp1Q811S7 Rspo4-201ENSMUST00000042217 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Ubp1Q811S7 Slc20a2-201ENSMUST00000067786 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Ubp1Q811S7 Gm26850-201ENSMUST00000181653 2669 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Ubp1Q811S7 Slc35e2-201ENSMUST00000043829 2910 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ubp1Q811S7 Pafah1b1-202ENSMUST00000102520 5789 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ubp1Q811S7 Synm-202ENSMUST00000074233 7818 ntAPPRIS P4 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ubp1Q811S7 Cdc42ep1-201ENSMUST00000059619 2542 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ubp1Q811S7 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
Ubp1Q811S7 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.12
Ubp1Q811S7 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.12
Ubp1Q811S7 Gm11201-201ENSMUST00000143473 701 ntTSL 3 BASIC14.33□□□□□ -0.12
Ubp1Q811S7 Gm6944-201ENSMUST00000182449 1006 ntBASIC14.33□□□□□ -0.12
Ubp1Q811S7 Ighv1-15-201ENSMUST00000192077 351 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Ubp1Q811S7 Gm34397-203ENSMUST00000214991 630 ntTSL 5 BASIC14.33□□□□□ -0.12
Ubp1Q811S7 Rnf138rt1-201ENSMUST00000059320 1191 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Ubp1Q811S7 Tbx15-201ENSMUST00000029462 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ubp1Q811S7 Col2a1-202ENSMUST00000088355 4862 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ubp1Q811S7 Ttc22-201ENSMUST00000047922 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ubp1Q811S7 Nudt18-203ENSMUST00000228768 1578 ntBASIC14.33□□□□□ -0.12
Ubp1Q811S7 Rhoj-202ENSMUST00000118602 2396 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Ubp1Q811S7 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ubp1Q811S7 Fstl4-201ENSMUST00000036796 4380 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ubp1Q811S7 Coq6-203ENSMUST00000110278 1354 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Ubp1Q811S7 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ubp1Q811S7 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ubp1Q811S7 Cpsf6-206ENSMUST00000176670 2227 ntTSL 5 BASIC14.33□□□□□ -0.12
Ubp1Q811S7 Cluh-202ENSMUST00000117818 4284 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ubp1Q811S7 Lgi3-201ENSMUST00000047331 3174 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ubp1Q811S7 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ubp1Q811S7 Plppr2-202ENSMUST00000188468 1480 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Ubp1Q811S7 Acp6-201ENSMUST00000090759 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ubp1Q811S7 Rasal3-204ENSMUST00000135618 3293 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Ubp1Q811S7 Nfe2l1-201ENSMUST00000081775 4654 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ubp1Q811S7 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ubp1Q811S7 Crem-221ENSMUST00000142690 1256 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 35.6 ms