Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
Upf3bQ3ULL6 Adamts7-201ENSMUST00000113059 5379 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
Upf3bQ3ULL6 Hsp90b1-201ENSMUST00000020238 2825 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Upf3bQ3ULL6 Farp2-201ENSMUST00000120301 3937 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Upf3bQ3ULL6 Egfl7-212ENSMUST00000166920 1391 ntAPPRIS P4 TSL 1 (best) BASIC15.58■□□□□ 0.08
Upf3bQ3ULL6 Atp4b-201ENSMUST00000033826 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Upf3bQ3ULL6 Vdac3-201ENSMUST00000009036 1354 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
Upf3bQ3ULL6 Mocs1-201ENSMUST00000024797 2646 ntTSL 5 BASIC15.58■□□□□ 0.08
Upf3bQ3ULL6 Ppia-206ENSMUST00000213200 1450 ntTSL 5 BASIC15.58■□□□□ 0.08
Upf3bQ3ULL6 Gm45504-201ENSMUST00000211407 2107 ntBASIC15.58■□□□□ 0.08
Upf3bQ3ULL6 Gpank1-202ENSMUST00000165306 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
Upf3bQ3ULL6 Krt42-201ENSMUST00000017270 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Upf3bQ3ULL6 Eif4a3-201ENSMUST00000026667 1509 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Upf3bQ3ULL6 Ppfia3-201ENSMUST00000003961 4647 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Upf3bQ3ULL6 Plxnb1-201ENSMUST00000072093 8649 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Upf3bQ3ULL6 BC026585-201ENSMUST00000046743 1618 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Upf3bQ3ULL6 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
Upf3bQ3ULL6 Dpp7-201ENSMUST00000028332 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Upf3bQ3ULL6 Fbxo8-202ENSMUST00000110322 1709 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Upf3bQ3ULL6 Zfp36-202ENSMUST00000209061 2465 ntAPPRIS ALT2 BASIC15.57■□□□□ 0.08
Upf3bQ3ULL6 Fem1a-201ENSMUST00000060253 6816 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
Upf3bQ3ULL6 Cct6b-202ENSMUST00000100722 1871 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Upf3bQ3ULL6 AI849053-201ENSMUST00000181021 2658 ntTSL 3 BASIC15.57■□□□□ 0.08
Upf3bQ3ULL6 Tnfrsf11a-201ENSMUST00000027559 5027 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Upf3bQ3ULL6 Slc33a1-202ENSMUST00000160883 1978 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
Upf3bQ3ULL6 Fbxo25-201ENSMUST00000043520 2012 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
Upf3bQ3ULL6 Gm23935-201ENSMUST00000102303 57 ntBASIC15.57■□□□□ 0.08
Upf3bQ3ULL6 Gm24270-201ENSMUST00000102326 57 ntBASIC15.57■□□□□ 0.08
Upf3bQ3ULL6 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC15.57■□□□□ 0.08
Upf3bQ3ULL6 Dph3-205ENSMUST00000124303 809 ntTSL 2 BASIC15.57■□□□□ 0.08
Upf3bQ3ULL6 Serpinf1-202ENSMUST00000125982 605 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Upf3bQ3ULL6 Rasd2-201ENSMUST00000132133 1299 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Upf3bQ3ULL6 Gm13431-203ENSMUST00000147012 388 ntTSL 2 BASIC15.57■□□□□ 0.08
Upf3bQ3ULL6 Gm24245-201ENSMUST00000157318 57 ntBASIC15.57■□□□□ 0.08
Upf3bQ3ULL6 Gm34964-201ENSMUST00000207398 417 ntTSL 5 BASIC15.57■□□□□ 0.08
Upf3bQ3ULL6 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC15.57■□□□□ 0.08
Upf3bQ3ULL6 3110079O15Rik-201ENSMUST00000027476 478 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Upf3bQ3ULL6 Gm42934-201ENSMUST00000196920 1345 ntBASIC15.57■□□□□ 0.08
Upf3bQ3ULL6 Klk10-201ENSMUST00000014058 1373 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Upf3bQ3ULL6 Lpar5-203ENSMUST00000171989 1458 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
Upf3bQ3ULL6 Ephb2-201ENSMUST00000059287 4804 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
Upf3bQ3ULL6 Ap5m1-205ENSMUST00000227431 3757 ntBASIC15.57■□□□□ 0.08
Upf3bQ3ULL6 Aldh1b1-201ENSMUST00000044384 2298 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Upf3bQ3ULL6 Mast2-201ENSMUST00000003908 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Upf3bQ3ULL6 Rhoj-202ENSMUST00000118602 2396 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Upf3bQ3ULL6 Sass6-205ENSMUST00000198311 2404 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Upf3bQ3ULL6 Fam167a-201ENSMUST00000121288 4231 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Upf3bQ3ULL6 Phf12-201ENSMUST00000049167 4410 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Upf3bQ3ULL6 Syn2-201ENSMUST00000009538 2708 ntAPPRIS P4 TSL 1 (best) BASIC15.56■□□□□ 0.08
Upf3bQ3ULL6 Galnt14-201ENSMUST00000024858 2990 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Upf3bQ3ULL6 Ccne2-207ENSMUST00000170901 3006 ntAPPRIS P4 TSL 1 (best) BASIC15.56■□□□□ 0.08
Upf3bQ3ULL6 Ppp2r5e-205ENSMUST00000220035 3135 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Upf3bQ3ULL6 Loxl2-201ENSMUST00000022660 5316 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Upf3bQ3ULL6 Dock4-201ENSMUST00000037488 8552 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Upf3bQ3ULL6 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC15.56■□□□□ 0.08
Upf3bQ3ULL6 Gm11682-201ENSMUST00000144689 516 ntTSL 3 BASIC15.56■□□□□ 0.08
Upf3bQ3ULL6 Nudt6-208ENSMUST00000146324 1264 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Upf3bQ3ULL6 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC15.56■□□□□ 0.08
Upf3bQ3ULL6 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC15.56■□□□□ 0.08
Upf3bQ3ULL6 Mir6990-201ENSMUST00000183724 91 ntBASIC15.56■□□□□ 0.08
Upf3bQ3ULL6 Gm38225-201ENSMUST00000194001 393 ntBASIC15.56■□□□□ 0.08
Upf3bQ3ULL6 Gm44335-201ENSMUST00000196879 141 ntBASIC15.56■□□□□ 0.08
Upf3bQ3ULL6 Gm44297-201ENSMUST00000198304 141 ntBASIC15.56■□□□□ 0.08
Upf3bQ3ULL6 Gm44346-201ENSMUST00000198851 141 ntBASIC15.56■□□□□ 0.08
Upf3bQ3ULL6 Gm44662-201ENSMUST00000206970 412 ntTSL 5 BASIC15.56■□□□□ 0.08
Upf3bQ3ULL6 Ager-209ENSMUST00000174496 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Upf3bQ3ULL6 Gm14221-202ENSMUST00000209603 1437 ntTSL 5 BASIC15.56■□□□□ 0.08
Upf3bQ3ULL6 Ap3s1-201ENSMUST00000025357 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Upf3bQ3ULL6 Serp1-201ENSMUST00000029385 4611 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Upf3bQ3ULL6 Rusc2-207ENSMUST00000131668 5093 ntTSL 5 BASIC15.56■□□□□ 0.08
Upf3bQ3ULL6 Gm10110-201ENSMUST00000081204 1891 ntTSL 5 BASIC15.56■□□□□ 0.08
Upf3bQ3ULL6 Ftcd-201ENSMUST00000001183 1933 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Upf3bQ3ULL6 Pax7-201ENSMUST00000030508 5854 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Upf3bQ3ULL6 Plin5-201ENSMUST00000019808 1986 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Upf3bQ3ULL6 Psmd13-201ENSMUST00000026560 1989 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Upf3bQ3ULL6 Lmntd2-202ENSMUST00000170841 2077 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Upf3bQ3ULL6 Ppp2r1a-201ENSMUST00000007708 2410 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Upf3bQ3ULL6 Fancm-201ENSMUST00000058889 7775 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Upf3bQ3ULL6 Cnksr2-202ENSMUST00000112513 4471 ntTSL 5 BASIC15.55■□□□□ 0.08
Upf3bQ3ULL6 Casc4-204ENSMUST00000110586 4032 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Upf3bQ3ULL6 Nab1-205ENSMUST00000186764 3640 ntAPPRIS ALT1 TSL 5 BASIC15.55■□□□□ 0.08
Upf3bQ3ULL6 Ece2-204ENSMUST00000133344 3042 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Upf3bQ3ULL6 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Upf3bQ3ULL6 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
Upf3bQ3ULL6 Mtmr7-202ENSMUST00000048898 2488 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Upf3bQ3ULL6 Hdac8-201ENSMUST00000087916 1936 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Upf3bQ3ULL6 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
Upf3bQ3ULL6 Slc35c2-201ENSMUST00000017808 1843 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Upf3bQ3ULL6 Ptcd2-201ENSMUST00000022153 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Upf3bQ3ULL6 Cdcp2-202ENSMUST00000221740 1623 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
Upf3bQ3ULL6 Kif11-201ENSMUST00000012587 4819 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Upf3bQ3ULL6 Tmem59l-201ENSMUST00000045286 1491 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Upf3bQ3ULL6 Fgfr2-207ENSMUST00000117872 4223 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Upf3bQ3ULL6 Sebox-201ENSMUST00000001130 1351 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Upf3bQ3ULL6 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Upf3bQ3ULL6 Nme1-202ENSMUST00000107844 452 ntTSL 3 BASIC15.55■□□□□ 0.08
Upf3bQ3ULL6 Bcl2l2-204ENSMUST00000172844 498 ntTSL 5 BASIC15.55■□□□□ 0.08
Upf3bQ3ULL6 9230114J08Rik-201ENSMUST00000200375 350 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Upf3bQ3ULL6 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC15.55■□□□□ 0.08
Upf3bQ3ULL6 Gm34397-203ENSMUST00000214991 630 ntTSL 5 BASIC15.55■□□□□ 0.08
Retrieved 100 of 76,532 protein–RNA pairs in 38.8 ms