Protein–RNA interactions for Protein: Q9ESN2

Trim39, E3 ubiquitin-protein ligase TRIM39, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39Q9ESN2 AC124392.1-201ENSMUST00000225172 5324 ntBASIC20.43■□□□□ 0.86
Trim39Q9ESN2 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC20.43■□□□□ 0.86
Trim39Q9ESN2 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC20.43■□□□□ 0.86
Trim39Q9ESN2 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
Trim39Q9ESN2 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC20.42■□□□□ 0.86
Trim39Q9ESN2 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Trim39Q9ESN2 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC20.42■□□□□ 0.86
Trim39Q9ESN2 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trim39Q9ESN2 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC20.41■□□□□ 0.86
Trim39Q9ESN2 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
Trim39Q9ESN2 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
Trim39Q9ESN2 Mir3960-201ENSMUST00000198213 73 ntBASIC20.41■□□□□ 0.86
Trim39Q9ESN2 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trim39Q9ESN2 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC20.41■□□□□ 0.86
Trim39Q9ESN2 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trim39Q9ESN2 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
Trim39Q9ESN2 AC154454.1-201ENSMUST00000225253 216 ntBASIC20.4■□□□□ 0.86
Trim39Q9ESN2 AC167019.3-201ENSMUST00000228225 1266 ntBASIC20.4■□□□□ 0.86
Trim39Q9ESN2 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Trim39Q9ESN2 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Trim39Q9ESN2 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Trim39Q9ESN2 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Trim39Q9ESN2 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Trim39Q9ESN2 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC20.38■□□□□ 0.85
Trim39Q9ESN2 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trim39Q9ESN2 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trim39Q9ESN2 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trim39Q9ESN2 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Trim39Q9ESN2 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Trim39Q9ESN2 Gm38160-201ENSMUST00000193090 2499 ntBASIC20.37■□□□□ 0.85
Trim39Q9ESN2 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trim39Q9ESN2 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trim39Q9ESN2 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trim39Q9ESN2 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trim39Q9ESN2 Gm45364-201ENSMUST00000210883 159 ntBASIC20.36■□□□□ 0.85
Trim39Q9ESN2 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
Trim39Q9ESN2 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trim39Q9ESN2 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trim39Q9ESN2 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
Trim39Q9ESN2 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Trim39Q9ESN2 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trim39Q9ESN2 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trim39Q9ESN2 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC20.35■□□□□ 0.85
Trim39Q9ESN2 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Trim39Q9ESN2 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trim39Q9ESN2 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
Trim39Q9ESN2 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trim39Q9ESN2 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Trim39Q9ESN2 Insm2-201ENSMUST00000051857 2660 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
Trim39Q9ESN2 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Trim39Q9ESN2 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Trim39Q9ESN2 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
Trim39Q9ESN2 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
Trim39Q9ESN2 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trim39Q9ESN2 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trim39Q9ESN2 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trim39Q9ESN2 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trim39Q9ESN2 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC20.32■□□□□ 0.84
Trim39Q9ESN2 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trim39Q9ESN2 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Trim39Q9ESN2 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
Trim39Q9ESN2 Gm12818-201ENSMUST00000117562 1349 ntBASIC20.31■□□□□ 0.84
Trim39Q9ESN2 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trim39Q9ESN2 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trim39Q9ESN2 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
Trim39Q9ESN2 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trim39Q9ESN2 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Trim39Q9ESN2 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trim39Q9ESN2 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim39Q9ESN2 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC20.3■□□□□ 0.84
Trim39Q9ESN2 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim39Q9ESN2 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim39Q9ESN2 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Trim39Q9ESN2 AC122317.2-201ENSMUST00000218708 1248 ntBASIC20.3■□□□□ 0.84
Trim39Q9ESN2 Gm9812-201ENSMUST00000061934 968 ntBASIC20.3■□□□□ 0.84
Trim39Q9ESN2 Gm6311-201ENSMUST00000073790 878 ntBASIC20.3■□□□□ 0.84
Trim39Q9ESN2 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Trim39Q9ESN2 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
Trim39Q9ESN2 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Trim39Q9ESN2 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC20.29■□□□□ 0.84
Trim39Q9ESN2 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Trim39Q9ESN2 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC20.29■□□□□ 0.84
Trim39Q9ESN2 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Trim39Q9ESN2 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
Trim39Q9ESN2 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trim39Q9ESN2 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Trim39Q9ESN2 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
Trim39Q9ESN2 Pkd1-207ENSMUST00000228550 1050 ntBASIC20.28■□□□□ 0.84
Trim39Q9ESN2 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC20.28■□□□□ 0.84
Trim39Q9ESN2 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
Trim39Q9ESN2 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trim39Q9ESN2 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trim39Q9ESN2 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim39Q9ESN2 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim39Q9ESN2 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
Trim39Q9ESN2 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Trim39Q9ESN2 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Trim39Q9ESN2 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trim39Q9ESN2 Gm42699-201ENSMUST00000198104 1657 ntBASIC20.26■□□□□ 0.83
Trim39Q9ESN2 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 10.8 ms