Protein–RNA interactions for Protein: Q99LC2

Cstf1, Cleavage stimulation factor subunit 1, mousemouse

Known RBP Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cstf1Q99LC2 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Cstf1Q99LC2 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
Cstf1Q99LC2 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Cstf1Q99LC2 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC22.19■■□□□ 1.14
Cstf1Q99LC2 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Cstf1Q99LC2 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC22.18■■□□□ 1.14
Cstf1Q99LC2 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
Cstf1Q99LC2 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC22.18■■□□□ 1.14
Cstf1Q99LC2 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
Cstf1Q99LC2 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC22.18■■□□□ 1.14
Cstf1Q99LC2 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC22.17■■□□□ 1.14
Cstf1Q99LC2 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Cstf1Q99LC2 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Cstf1Q99LC2 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Cstf1Q99LC2 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
Cstf1Q99LC2 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC22.15■■□□□ 1.14
Cstf1Q99LC2 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC22.15■■□□□ 1.14
Cstf1Q99LC2 Gm5131-201ENSMUST00000212776 1238 ntBASIC22.15■■□□□ 1.14
Cstf1Q99LC2 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Cstf1Q99LC2 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Cstf1Q99LC2 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC22.15■■□□□ 1.14
Cstf1Q99LC2 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC22.14■■□□□ 1.14
Cstf1Q99LC2 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.14
Cstf1Q99LC2 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC22.14■■□□□ 1.14
Cstf1Q99LC2 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
Cstf1Q99LC2 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
Cstf1Q99LC2 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC22.14■■□□□ 1.13
Cstf1Q99LC2 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC22.14■■□□□ 1.13
Cstf1Q99LC2 Gm13241-201ENSMUST00000094493 780 ntBASIC22.14■■□□□ 1.13
Cstf1Q99LC2 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
Cstf1Q99LC2 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Cstf1Q99LC2 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC22.13■■□□□ 1.13
Cstf1Q99LC2 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Cstf1Q99LC2 Gm43034-201ENSMUST00000198678 1364 ntBASIC22.12■■□□□ 1.13
Cstf1Q99LC2 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Cstf1Q99LC2 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Cstf1Q99LC2 Gm7417-201ENSMUST00000192950 473 ntBASIC22.12■■□□□ 1.13
Cstf1Q99LC2 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Cstf1Q99LC2 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
Cstf1Q99LC2 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Cstf1Q99LC2 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
Cstf1Q99LC2 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
Cstf1Q99LC2 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC22.11■■□□□ 1.13
Cstf1Q99LC2 Spata6-213ENSMUST00000153746 1444 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
Cstf1Q99LC2 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
Cstf1Q99LC2 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Cstf1Q99LC2 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
Cstf1Q99LC2 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Cstf1Q99LC2 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC22.1■■□□□ 1.13
Cstf1Q99LC2 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Cstf1Q99LC2 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC22.1■■□□□ 1.13
Cstf1Q99LC2 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Cstf1Q99LC2 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Cstf1Q99LC2 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Cstf1Q99LC2 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC22.09■■□□□ 1.13
Cstf1Q99LC2 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Cstf1Q99LC2 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Cstf1Q99LC2 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Cstf1Q99LC2 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Cstf1Q99LC2 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
Cstf1Q99LC2 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC22.07■■□□□ 1.12
Cstf1Q99LC2 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
Cstf1Q99LC2 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
Cstf1Q99LC2 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Cstf1Q99LC2 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
Cstf1Q99LC2 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC22.06■■□□□ 1.12
Cstf1Q99LC2 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Cstf1Q99LC2 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC22.06■■□□□ 1.12
Cstf1Q99LC2 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Cstf1Q99LC2 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
Cstf1Q99LC2 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC22.05■■□□□ 1.12
Cstf1Q99LC2 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Cstf1Q99LC2 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
Cstf1Q99LC2 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC22.05■■□□□ 1.12
Cstf1Q99LC2 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC22.05■■□□□ 1.12
Cstf1Q99LC2 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Cstf1Q99LC2 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Cstf1Q99LC2 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Cstf1Q99LC2 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Cstf1Q99LC2 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Cstf1Q99LC2 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
Cstf1Q99LC2 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
Cstf1Q99LC2 Gm9847-201ENSMUST00000052528 599 ntBASIC22.03■■□□□ 1.12
Cstf1Q99LC2 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC22.02■■□□□ 1.12
Cstf1Q99LC2 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC22.02■■□□□ 1.12
Cstf1Q99LC2 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
Cstf1Q99LC2 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
Cstf1Q99LC2 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC22.02■■□□□ 1.12
Cstf1Q99LC2 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Cstf1Q99LC2 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Cstf1Q99LC2 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC22.01■■□□□ 1.11
Cstf1Q99LC2 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC22.01■■□□□ 1.11
Cstf1Q99LC2 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
Cstf1Q99LC2 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Cstf1Q99LC2 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC22■■□□□ 1.11
Cstf1Q99LC2 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC22■■□□□ 1.11
Cstf1Q99LC2 AC153890.1-201ENSMUST00000220021 2469 ntBASIC22■■□□□ 1.11
Cstf1Q99LC2 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC22■■□□□ 1.11
Cstf1Q99LC2 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Cstf1Q99LC2 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Retrieved 100 of 76,532 protein–RNA pairs in 40.4 ms