Protein–RNA interactions for Protein: Q8K445

Clrn1, Clarin-1, mousemouse

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn1Q8K445 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
Clrn1Q8K445 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC20.82■□□□□ 0.92
Clrn1Q8K445 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Clrn1Q8K445 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Clrn1Q8K445 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
Clrn1Q8K445 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC20.81■□□□□ 0.92
Clrn1Q8K445 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Clrn1Q8K445 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC20.81■□□□□ 0.92
Clrn1Q8K445 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Clrn1Q8K445 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Clrn1Q8K445 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Clrn1Q8K445 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
Clrn1Q8K445 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
Clrn1Q8K445 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Clrn1Q8K445 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
Clrn1Q8K445 Gm7199-201ENSMUST00000118327 1485 ntBASIC20.79■□□□□ 0.92
Clrn1Q8K445 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Clrn1Q8K445 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
Clrn1Q8K445 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Clrn1Q8K445 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC20.78■□□□□ 0.92
Clrn1Q8K445 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Clrn1Q8K445 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Clrn1Q8K445 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Clrn1Q8K445 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Clrn1Q8K445 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Clrn1Q8K445 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC20.77■□□□□ 0.92
Clrn1Q8K445 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Clrn1Q8K445 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.91
Clrn1Q8K445 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
Clrn1Q8K445 Mir6538-201ENSMUST00000183713 110 ntBASIC20.76■□□□□ 0.91
Clrn1Q8K445 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Clrn1Q8K445 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
Clrn1Q8K445 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Clrn1Q8K445 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Clrn1Q8K445 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Clrn1Q8K445 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
Clrn1Q8K445 AC151971.4-201ENSMUST00000214717 704 ntBASIC20.75■□□□□ 0.91
Clrn1Q8K445 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC20.75■□□□□ 0.91
Clrn1Q8K445 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Clrn1Q8K445 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Clrn1Q8K445 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC20.74■□□□□ 0.91
Clrn1Q8K445 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC20.74■□□□□ 0.91
Clrn1Q8K445 Gm27502-201ENSMUST00000183495 199 ntBASIC20.74■□□□□ 0.91
Clrn1Q8K445 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Clrn1Q8K445 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Clrn1Q8K445 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Clrn1Q8K445 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Clrn1Q8K445 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Clrn1Q8K445 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC20.73■□□□□ 0.91
Clrn1Q8K445 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Clrn1Q8K445 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Clrn1Q8K445 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
Clrn1Q8K445 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Clrn1Q8K445 Gm6934-201ENSMUST00000194780 1905 ntBASIC20.72■□□□□ 0.91
Clrn1Q8K445 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Clrn1Q8K445 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC20.72■□□□□ 0.91
Clrn1Q8K445 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Clrn1Q8K445 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC20.71■□□□□ 0.91
Clrn1Q8K445 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Clrn1Q8K445 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Clrn1Q8K445 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Clrn1Q8K445 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Clrn1Q8K445 AC117769.4-201ENSMUST00000225679 685 ntBASIC20.7■□□□□ 0.9
Clrn1Q8K445 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Clrn1Q8K445 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
Clrn1Q8K445 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Clrn1Q8K445 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Clrn1Q8K445 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Clrn1Q8K445 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Clrn1Q8K445 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Clrn1Q8K445 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Clrn1Q8K445 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Clrn1Q8K445 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Clrn1Q8K445 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Clrn1Q8K445 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC20.67■□□□□ 0.9
Clrn1Q8K445 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Clrn1Q8K445 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC20.67■□□□□ 0.9
Clrn1Q8K445 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
Clrn1Q8K445 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
Clrn1Q8K445 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Clrn1Q8K445 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Clrn1Q8K445 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Clrn1Q8K445 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Clrn1Q8K445 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
Clrn1Q8K445 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Clrn1Q8K445 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC20.65■□□□□ 0.9
Clrn1Q8K445 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Clrn1Q8K445 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Clrn1Q8K445 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC20.65■□□□□ 0.9
Clrn1Q8K445 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC20.65■□□□□ 0.9
Clrn1Q8K445 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Clrn1Q8K445 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Clrn1Q8K445 Tirap-207ENSMUST00000177129 2366 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Clrn1Q8K445 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Clrn1Q8K445 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC20.64■□□□□ 0.89
Clrn1Q8K445 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Clrn1Q8K445 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Clrn1Q8K445 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Clrn1Q8K445 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Clrn1Q8K445 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 54.2 ms