Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
Usp40Q8BWR4 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
Usp40Q8BWR4 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
Usp40Q8BWR4 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
Usp40Q8BWR4 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
Usp40Q8BWR4 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC30.87■■■□□ 2.53
Usp40Q8BWR4 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC30.87■■■□□ 2.53
Usp40Q8BWR4 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC30.87■■■□□ 2.53
Usp40Q8BWR4 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC30.87■■■□□ 2.53
Usp40Q8BWR4 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC30.86■■■□□ 2.53
Usp40Q8BWR4 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC30.86■■■□□ 2.53
Usp40Q8BWR4 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC30.86■■■□□ 2.53
Usp40Q8BWR4 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
Usp40Q8BWR4 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC30.85■■■□□ 2.53
Usp40Q8BWR4 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC30.85■■■□□ 2.53
Usp40Q8BWR4 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC30.85■■■□□ 2.53
Usp40Q8BWR4 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC30.85■■■□□ 2.53
Usp40Q8BWR4 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
Usp40Q8BWR4 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
Usp40Q8BWR4 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
Usp40Q8BWR4 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
Usp40Q8BWR4 Gm22567-201ENSMUST00000175542 342 ntBASIC30.84■■■□□ 2.53
Usp40Q8BWR4 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC30.84■■■□□ 2.53
Usp40Q8BWR4 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
Usp40Q8BWR4 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC30.84■■■□□ 2.53
Usp40Q8BWR4 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC30.84■■■□□ 2.53
Usp40Q8BWR4 Gm15820-201ENSMUST00000201566 728 ntBASIC30.83■■■□□ 2.53
Usp40Q8BWR4 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
Usp40Q8BWR4 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
Usp40Q8BWR4 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
Usp40Q8BWR4 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC30.82■■■□□ 2.52
Usp40Q8BWR4 AC093043.1-201ENSMUST00000226700 898 ntBASIC30.82■■■□□ 2.52
Usp40Q8BWR4 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
Usp40Q8BWR4 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
Usp40Q8BWR4 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC30.8■■■□□ 2.52
Usp40Q8BWR4 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC30.79■■■□□ 2.52
Usp40Q8BWR4 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
Usp40Q8BWR4 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC30.78■■■□□ 2.52
Usp40Q8BWR4 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC30.78■■■□□ 2.52
Usp40Q8BWR4 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
Usp40Q8BWR4 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC30.77■■■□□ 2.52
Usp40Q8BWR4 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
Usp40Q8BWR4 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
Usp40Q8BWR4 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC30.76■■■□□ 2.52
Usp40Q8BWR4 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC30.76■■■□□ 2.51
Usp40Q8BWR4 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC30.76■■■□□ 2.51
Usp40Q8BWR4 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC30.76■■■□□ 2.51
Usp40Q8BWR4 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
Usp40Q8BWR4 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
Usp40Q8BWR4 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
Usp40Q8BWR4 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC30.76■■■□□ 2.51
Usp40Q8BWR4 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC30.75■■■□□ 2.51
Usp40Q8BWR4 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
Usp40Q8BWR4 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
Usp40Q8BWR4 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC30.74■■■□□ 2.51
Usp40Q8BWR4 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
Usp40Q8BWR4 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
Usp40Q8BWR4 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
Usp40Q8BWR4 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
Usp40Q8BWR4 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC30.71■■■□□ 2.51
Usp40Q8BWR4 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC30.71■■■□□ 2.51
Usp40Q8BWR4 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC30.71■■■□□ 2.51
Usp40Q8BWR4 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC30.71■■■□□ 2.51
Usp40Q8BWR4 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
Usp40Q8BWR4 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
Usp40Q8BWR4 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC30.7■■■□□ 2.51
Usp40Q8BWR4 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
Usp40Q8BWR4 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC30.7■■■□□ 2.51
Usp40Q8BWR4 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
Usp40Q8BWR4 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC30.7■■■□□ 2.51
Usp40Q8BWR4 Spata6-213ENSMUST00000153746 1444 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
Usp40Q8BWR4 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC30.69■■■□□ 2.5
Usp40Q8BWR4 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
Usp40Q8BWR4 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC30.68■■■□□ 2.5
Usp40Q8BWR4 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
Usp40Q8BWR4 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
Usp40Q8BWR4 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC30.66■■■□□ 2.5
Usp40Q8BWR4 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
Usp40Q8BWR4 Gm42699-201ENSMUST00000198104 1657 ntBASIC30.65■■■□□ 2.5
Usp40Q8BWR4 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
Usp40Q8BWR4 1700016H13Rik-204ENSMUST00000120688 612 ntAPPRIS P1 TSL 3 BASIC30.65■■■□□ 2.5
Usp40Q8BWR4 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC30.65■■■□□ 2.5
Usp40Q8BWR4 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
Usp40Q8BWR4 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC30.64■■■□□ 2.5
Usp40Q8BWR4 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC30.64■■■□□ 2.5
Usp40Q8BWR4 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
Usp40Q8BWR4 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC30.64■■■□□ 2.5
Usp40Q8BWR4 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
Usp40Q8BWR4 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC30.63■■■□□ 2.49
Usp40Q8BWR4 AC153524.1-201ENSMUST00000220436 1935 ntBASIC30.63■■■□□ 2.49
Usp40Q8BWR4 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC30.63■■■□□ 2.49
Usp40Q8BWR4 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
Usp40Q8BWR4 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC30.63■■■□□ 2.49
Usp40Q8BWR4 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
Usp40Q8BWR4 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
Usp40Q8BWR4 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
Usp40Q8BWR4 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC30.62■■■□□ 2.49
Usp40Q8BWR4 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC30.62■■■□□ 2.49
Usp40Q8BWR4 Rps24-207ENSMUST00000224568 714 ntBASIC30.62■■■□□ 2.49
Usp40Q8BWR4 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC30.62■■■□□ 2.49
Retrieved 100 of 76,532 protein–RNA pairs in 12.8 ms