Protein–RNA interactions for Protein: Q8BGE6

Atg4b, Cysteine protease ATG4B, mousemouse

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Atg4bQ8BGE6 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Atg4bQ8BGE6 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Atg4bQ8BGE6 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
Atg4bQ8BGE6 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Atg4bQ8BGE6 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Atg4bQ8BGE6 Gm27502-201ENSMUST00000183495 199 ntBASIC20.83■□□□□ 0.93
Atg4bQ8BGE6 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Atg4bQ8BGE6 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Atg4bQ8BGE6 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
Atg4bQ8BGE6 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Atg4bQ8BGE6 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC20.81■□□□□ 0.92
Atg4bQ8BGE6 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC20.81■□□□□ 0.92
Atg4bQ8BGE6 Tirap-207ENSMUST00000177129 2366 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Atg4bQ8BGE6 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Atg4bQ8BGE6 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Atg4bQ8BGE6 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Atg4bQ8BGE6 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Atg4bQ8BGE6 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Atg4bQ8BGE6 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC20.8■□□□□ 0.92
Atg4bQ8BGE6 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Atg4bQ8BGE6 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Atg4bQ8BGE6 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Atg4bQ8BGE6 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Atg4bQ8BGE6 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Atg4bQ8BGE6 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Atg4bQ8BGE6 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
Atg4bQ8BGE6 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC20.78■□□□□ 0.92
Atg4bQ8BGE6 AC117769.4-201ENSMUST00000225679 685 ntBASIC20.78■□□□□ 0.92
Atg4bQ8BGE6 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Atg4bQ8BGE6 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Atg4bQ8BGE6 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Atg4bQ8BGE6 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Atg4bQ8BGE6 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Atg4bQ8BGE6 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC20.77■□□□□ 0.92
Atg4bQ8BGE6 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Atg4bQ8BGE6 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Atg4bQ8BGE6 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC20.77■□□□□ 0.92
Atg4bQ8BGE6 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
Atg4bQ8BGE6 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
Atg4bQ8BGE6 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
Atg4bQ8BGE6 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Atg4bQ8BGE6 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC20.76■□□□□ 0.91
Atg4bQ8BGE6 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Atg4bQ8BGE6 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Atg4bQ8BGE6 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Atg4bQ8BGE6 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Atg4bQ8BGE6 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Atg4bQ8BGE6 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Atg4bQ8BGE6 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
Atg4bQ8BGE6 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Atg4bQ8BGE6 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Atg4bQ8BGE6 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Atg4bQ8BGE6 AC153524.1-201ENSMUST00000220436 1935 ntBASIC20.74■□□□□ 0.91
Atg4bQ8BGE6 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Atg4bQ8BGE6 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Atg4bQ8BGE6 Gm28731-201ENSMUST00000185564 1569 ntBASIC20.74■□□□□ 0.91
Atg4bQ8BGE6 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC20.74■□□□□ 0.91
Atg4bQ8BGE6 Gm14523-201ENSMUST00000117260 558 ntBASIC20.73■□□□□ 0.91
Atg4bQ8BGE6 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Atg4bQ8BGE6 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Atg4bQ8BGE6 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
Atg4bQ8BGE6 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
Atg4bQ8BGE6 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Atg4bQ8BGE6 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Atg4bQ8BGE6 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC20.72■□□□□ 0.91
Atg4bQ8BGE6 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Atg4bQ8BGE6 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Atg4bQ8BGE6 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC20.72■□□□□ 0.91
Atg4bQ8BGE6 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Atg4bQ8BGE6 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
Atg4bQ8BGE6 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
Atg4bQ8BGE6 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Atg4bQ8BGE6 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC20.71■□□□□ 0.91
Atg4bQ8BGE6 Gm12366-201ENSMUST00000121722 873 ntBASIC20.71■□□□□ 0.91
Atg4bQ8BGE6 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC20.71■□□□□ 0.91
Atg4bQ8BGE6 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
Atg4bQ8BGE6 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC20.71■□□□□ 0.91
Atg4bQ8BGE6 Gm5786-201ENSMUST00000085368 882 ntBASIC20.71■□□□□ 0.91
Atg4bQ8BGE6 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Atg4bQ8BGE6 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Atg4bQ8BGE6 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Atg4bQ8BGE6 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Atg4bQ8BGE6 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
Atg4bQ8BGE6 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Atg4bQ8BGE6 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Atg4bQ8BGE6 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
Atg4bQ8BGE6 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Atg4bQ8BGE6 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Atg4bQ8BGE6 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Atg4bQ8BGE6 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Atg4bQ8BGE6 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Atg4bQ8BGE6 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Atg4bQ8BGE6 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Atg4bQ8BGE6 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Atg4bQ8BGE6 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Atg4bQ8BGE6 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Atg4bQ8BGE6 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Atg4bQ8BGE6 Gm7332-201ENSMUST00000118351 454 ntBASIC20.68■□□□□ 0.9
Atg4bQ8BGE6 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC20.68■□□□□ 0.9
Atg4bQ8BGE6 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 246 ms