Protein–RNA interactions for Protein: Q811S7

Ubp1, Upstream-binding protein 1, mousemouse

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubp1Q811S7 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Ubp1Q811S7 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Ubp1Q811S7 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC21.74■■□□□ 1.07
Ubp1Q811S7 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC21.74■■□□□ 1.07
Ubp1Q811S7 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
Ubp1Q811S7 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
Ubp1Q811S7 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Ubp1Q811S7 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
Ubp1Q811S7 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC21.73■■□□□ 1.07
Ubp1Q811S7 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Ubp1Q811S7 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Ubp1Q811S7 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Ubp1Q811S7 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
Ubp1Q811S7 Gm7332-201ENSMUST00000118351 454 ntBASIC21.72■■□□□ 1.07
Ubp1Q811S7 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
Ubp1Q811S7 Flot2-201ENSMUST00000072289 2621 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Ubp1Q811S7 Gm7199-201ENSMUST00000118327 1485 ntBASIC21.71■■□□□ 1.07
Ubp1Q811S7 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Ubp1Q811S7 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Ubp1Q811S7 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Ubp1Q811S7 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Ubp1Q811S7 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
Ubp1Q811S7 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Ubp1Q811S7 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC21.7■■□□□ 1.06
Ubp1Q811S7 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC21.7■■□□□ 1.06
Ubp1Q811S7 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
Ubp1Q811S7 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Ubp1Q811S7 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Ubp1Q811S7 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC21.69■■□□□ 1.06
Ubp1Q811S7 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Ubp1Q811S7 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC21.69■■□□□ 1.06
Ubp1Q811S7 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC21.69■■□□□ 1.06
Ubp1Q811S7 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
Ubp1Q811S7 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Ubp1Q811S7 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC21.68■■□□□ 1.06
Ubp1Q811S7 AC117769.4-201ENSMUST00000225679 685 ntBASIC21.68■■□□□ 1.06
Ubp1Q811S7 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Ubp1Q811S7 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
Ubp1Q811S7 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Ubp1Q811S7 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Ubp1Q811S7 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Ubp1Q811S7 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Ubp1Q811S7 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Ubp1Q811S7 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Ubp1Q811S7 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
Ubp1Q811S7 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Ubp1Q811S7 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Ubp1Q811S7 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Ubp1Q811S7 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Ubp1Q811S7 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Ubp1Q811S7 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Ubp1Q811S7 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Ubp1Q811S7 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
Ubp1Q811S7 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Ubp1Q811S7 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
Ubp1Q811S7 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
Ubp1Q811S7 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Ubp1Q811S7 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Ubp1Q811S7 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC21.64■■□□□ 1.05
Ubp1Q811S7 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Ubp1Q811S7 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Ubp1Q811S7 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
Ubp1Q811S7 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Ubp1Q811S7 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
Ubp1Q811S7 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Ubp1Q811S7 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Ubp1Q811S7 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Ubp1Q811S7 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
Ubp1Q811S7 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Ubp1Q811S7 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Ubp1Q811S7 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Ubp1Q811S7 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC21.62■■□□□ 1.05
Ubp1Q811S7 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Ubp1Q811S7 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
Ubp1Q811S7 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Ubp1Q811S7 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Ubp1Q811S7 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
Ubp1Q811S7 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Ubp1Q811S7 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Ubp1Q811S7 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Ubp1Q811S7 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Ubp1Q811S7 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Ubp1Q811S7 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Ubp1Q811S7 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Ubp1Q811S7 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
Ubp1Q811S7 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
Ubp1Q811S7 Gm6934-201ENSMUST00000194780 1905 ntBASIC21.59■■□□□ 1.05
Ubp1Q811S7 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
Ubp1Q811S7 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC21.58■■□□□ 1.05
Ubp1Q811S7 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC21.58■■□□□ 1.05
Ubp1Q811S7 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Ubp1Q811S7 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Ubp1Q811S7 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
Ubp1Q811S7 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Ubp1Q811S7 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC21.57■■□□□ 1.04
Ubp1Q811S7 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Ubp1Q811S7 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Ubp1Q811S7 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
Ubp1Q811S7 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
Ubp1Q811S7 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Retrieved 100 of 76,532 protein–RNA pairs in 13.1 ms