Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
Trim56Q80VI1 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
Trim56Q80VI1 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC26.36■■□□□ 1.81
Trim56Q80VI1 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC26.36■■□□□ 1.81
Trim56Q80VI1 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC26.36■■□□□ 1.81
Trim56Q80VI1 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
Trim56Q80VI1 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC26.36■■□□□ 1.81
Trim56Q80VI1 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC26.36■■□□□ 1.81
Trim56Q80VI1 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
Trim56Q80VI1 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Trim56Q80VI1 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
Trim56Q80VI1 Gm10420-201ENSMUST00000121713 882 ntBASIC26.35■■□□□ 1.81
Trim56Q80VI1 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Trim56Q80VI1 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Trim56Q80VI1 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC26.34■■□□□ 1.81
Trim56Q80VI1 Il17rd-202ENSMUST00000223942 2186 ntBASIC26.34■■□□□ 1.81
Trim56Q80VI1 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC26.34■■□□□ 1.81
Trim56Q80VI1 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Trim56Q80VI1 H3f3aos-201ENSMUST00000097448 2905 ntBASIC26.33■■□□□ 1.81
Trim56Q80VI1 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC26.33■■□□□ 1.81
Trim56Q80VI1 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
Trim56Q80VI1 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Trim56Q80VI1 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Trim56Q80VI1 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Trim56Q80VI1 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC26.32■■□□□ 1.8
Trim56Q80VI1 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Trim56Q80VI1 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC26.31■■□□□ 1.8
Trim56Q80VI1 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC26.31■■□□□ 1.8
Trim56Q80VI1 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC26.31■■□□□ 1.8
Trim56Q80VI1 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
Trim56Q80VI1 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC26.3■■□□□ 1.8
Trim56Q80VI1 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
Trim56Q80VI1 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Trim56Q80VI1 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
Trim56Q80VI1 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC26.29■■□□□ 1.8
Trim56Q80VI1 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Trim56Q80VI1 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Trim56Q80VI1 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Trim56Q80VI1 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
Trim56Q80VI1 Gm6934-201ENSMUST00000194780 1905 ntBASIC26.28■■□□□ 1.8
Trim56Q80VI1 Gm5067-201ENSMUST00000170449 1009 ntBASIC26.28■■□□□ 1.8
Trim56Q80VI1 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC26.28■■□□□ 1.8
Trim56Q80VI1 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC26.28■■□□□ 1.8
Trim56Q80VI1 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Trim56Q80VI1 AC153524.1-201ENSMUST00000220436 1935 ntBASIC26.27■■□□□ 1.8
Trim56Q80VI1 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Trim56Q80VI1 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
Trim56Q80VI1 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC26.27■■□□□ 1.8
Trim56Q80VI1 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC26.27■■□□□ 1.8
Trim56Q80VI1 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Trim56Q80VI1 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC26.26■■□□□ 1.79
Trim56Q80VI1 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
Trim56Q80VI1 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC26.25■■□□□ 1.79
Trim56Q80VI1 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC26.25■■□□□ 1.79
Trim56Q80VI1 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC26.25■■□□□ 1.79
Trim56Q80VI1 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC26.25■■□□□ 1.79
Trim56Q80VI1 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Trim56Q80VI1 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
Trim56Q80VI1 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Trim56Q80VI1 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
Trim56Q80VI1 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
Trim56Q80VI1 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC26.23■■□□□ 1.79
Trim56Q80VI1 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC26.22■■□□□ 1.79
Trim56Q80VI1 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
Trim56Q80VI1 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Trim56Q80VI1 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Trim56Q80VI1 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Trim56Q80VI1 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Trim56Q80VI1 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Trim56Q80VI1 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Trim56Q80VI1 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC26.21■■□□□ 1.79
Trim56Q80VI1 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC26.2■■□□□ 1.79
Trim56Q80VI1 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
Trim56Q80VI1 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC26.2■■□□□ 1.78
Trim56Q80VI1 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
Trim56Q80VI1 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
Trim56Q80VI1 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC26.19■■□□□ 1.78
Trim56Q80VI1 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
Trim56Q80VI1 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
Trim56Q80VI1 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Trim56Q80VI1 Gm43592-201ENSMUST00000196922 1165 ntBASIC26.18■■□□□ 1.78
Trim56Q80VI1 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Trim56Q80VI1 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC26.18■■□□□ 1.78
Trim56Q80VI1 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Trim56Q80VI1 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC26.17■■□□□ 1.78
Trim56Q80VI1 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
Trim56Q80VI1 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC26.17■■□□□ 1.78
Trim56Q80VI1 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC26.17■■□□□ 1.78
Trim56Q80VI1 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Trim56Q80VI1 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Trim56Q80VI1 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC26.16■■□□□ 1.78
Trim56Q80VI1 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Trim56Q80VI1 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
Trim56Q80VI1 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC26.16■■□□□ 1.78
Trim56Q80VI1 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
Trim56Q80VI1 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Trim56Q80VI1 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC26.16■■□□□ 1.78
Trim56Q80VI1 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC26.15■■□□□ 1.78
Trim56Q80VI1 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC26.15■■□□□ 1.78
Trim56Q80VI1 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
Retrieved 100 of 76,532 protein–RNA pairs in 13.2 ms