Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC30.92■■■□□ 2.54
Col18a1P39061 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
Col18a1P39061 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC30.92■■■□□ 2.54
Col18a1P39061 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC30.91■■■□□ 2.54
Col18a1P39061 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
Col18a1P39061 Gm22238-201ENSMUST00000175222 88 ntBASIC30.91■■■□□ 2.54
Col18a1P39061 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
Col18a1P39061 Gm16464-201ENSMUST00000117815 1095 ntBASIC30.89■■■□□ 2.54
Col18a1P39061 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
Col18a1P39061 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
Col18a1P39061 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC30.89■■■□□ 2.54
Col18a1P39061 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC30.89■■■□□ 2.53
Col18a1P39061 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
Col18a1P39061 Gm7417-201ENSMUST00000192950 473 ntBASIC30.88■■■□□ 2.53
Col18a1P39061 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
Col18a1P39061 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
Col18a1P39061 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC30.87■■■□□ 2.53
Col18a1P39061 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
Col18a1P39061 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
Col18a1P39061 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC30.86■■■□□ 2.53
Col18a1P39061 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC30.86■■■□□ 2.53
Col18a1P39061 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC30.86■■■□□ 2.53
Col18a1P39061 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
Col18a1P39061 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
Col18a1P39061 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
Col18a1P39061 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC30.84■■■□□ 2.53
Col18a1P39061 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC30.84■■■□□ 2.53
Col18a1P39061 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
Col18a1P39061 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC30.83■■■□□ 2.53
Col18a1P39061 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC30.83■■■□□ 2.53
Col18a1P39061 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC30.83■■■□□ 2.53
Col18a1P39061 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC30.82■■■□□ 2.52
Col18a1P39061 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
Col18a1P39061 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC30.82■■■□□ 2.52
Col18a1P39061 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC30.82■■■□□ 2.52
Col18a1P39061 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC30.81■■■□□ 2.52
Col18a1P39061 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC30.81■■■□□ 2.52
Col18a1P39061 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
Col18a1P39061 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
Col18a1P39061 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC30.8■■■□□ 2.52
Col18a1P39061 Gm12922-201ENSMUST00000120626 809 ntBASIC30.79■■■□□ 2.52
Col18a1P39061 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC30.78■■■□□ 2.52
Col18a1P39061 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC30.78■■■□□ 2.52
Col18a1P39061 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC30.77■■■□□ 2.52
Col18a1P39061 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
Col18a1P39061 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
Col18a1P39061 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
Col18a1P39061 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC30.77■■■□□ 2.52
Col18a1P39061 Slc35b2-207ENSMUST00000226086 850 ntBASIC30.75■■■□□ 2.51
Col18a1P39061 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
Col18a1P39061 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC30.74■■■□□ 2.51
Col18a1P39061 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
Col18a1P39061 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC30.73■■■□□ 2.51
Col18a1P39061 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
Col18a1P39061 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
Col18a1P39061 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
Col18a1P39061 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC30.72■■■□□ 2.51
Col18a1P39061 Appbp2os-202ENSMUST00000206972 447 ntBASIC30.72■■■□□ 2.51
Col18a1P39061 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
Col18a1P39061 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC30.72■■■□□ 2.51
Col18a1P39061 Gm27454-201ENSMUST00000185090 204 ntBASIC30.71■■■□□ 2.51
Col18a1P39061 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC30.71■■■□□ 2.51
Col18a1P39061 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC30.71■■■□□ 2.51
Col18a1P39061 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
Col18a1P39061 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC30.7■■■□□ 2.51
Col18a1P39061 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
Col18a1P39061 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC30.7■■■□□ 2.5
Col18a1P39061 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC30.7■■■□□ 2.5
Col18a1P39061 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC30.7■■■□□ 2.5
Col18a1P39061 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
Col18a1P39061 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
Col18a1P39061 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
Col18a1P39061 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC30.68■■■□□ 2.5
Col18a1P39061 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC30.68■■■□□ 2.5
Col18a1P39061 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
Col18a1P39061 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC30.68■■■□□ 2.5
Col18a1P39061 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC30.68■■■□□ 2.5
Col18a1P39061 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
Col18a1P39061 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC30.66■■■□□ 2.5
Col18a1P39061 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
Col18a1P39061 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC30.63■■■□□ 2.49
Col18a1P39061 Gm7199-201ENSMUST00000118327 1485 ntBASIC30.62■■■□□ 2.49
Col18a1P39061 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC30.62■■■□□ 2.49
Col18a1P39061 Gm45417-201ENSMUST00000209533 758 ntBASIC30.62■■■□□ 2.49
Col18a1P39061 Gm40881-201ENSMUST00000223397 166 ntBASIC30.62■■■□□ 2.49
Col18a1P39061 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
Col18a1P39061 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
Col18a1P39061 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
Col18a1P39061 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC30.61■■■□□ 2.49
Col18a1P39061 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
Col18a1P39061 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
Col18a1P39061 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC30.61■■■□□ 2.49
Col18a1P39061 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC30.6■■■□□ 2.49
Col18a1P39061 AC140930.3-201ENSMUST00000222935 274 ntBASIC30.6■■■□□ 2.49
Col18a1P39061 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
Col18a1P39061 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
Col18a1P39061 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
Col18a1P39061 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
Col18a1P39061 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
Col18a1P39061 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC30.59■■■□□ 2.49
Retrieved 100 of 76,532 protein–RNA pairs in 14.7 ms