Protein–RNA interactions for Protein: Q99PQ2

Trim11, E3 ubiquitin-protein ligase TRIM11, mousemouse

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim11Q99PQ2 Teddm2-202ENSMUST00000123490 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim11Q99PQ2 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim11Q99PQ2 Daxx-201ENSMUST00000079421 2580 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim11Q99PQ2 Pld3-201ENSMUST00000117095 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim11Q99PQ2 Prkcz-201ENSMUST00000030922 2641 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim11Q99PQ2 Vav1-201ENSMUST00000005889 2963 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim11Q99PQ2 Ccne2-207ENSMUST00000170901 3006 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim11Q99PQ2 Grik5-201ENSMUST00000003468 3763 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim11Q99PQ2 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim11Q99PQ2 Apip-201ENSMUST00000011055 919 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim11Q99PQ2 Ankrd65-202ENSMUST00000165000 1140 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
Trim11Q99PQ2 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
Trim11Q99PQ2 Gm3764-206ENSMUST00000181356 1088 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Trim11Q99PQ2 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC16.61■□□□□ 0.25
Trim11Q99PQ2 Tpd52l1-202ENSMUST00000213528 969 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim11Q99PQ2 AC155729.1-201ENSMUST00000227758 544 ntBASIC16.61■□□□□ 0.25
Trim11Q99PQ2 Hsp90b1-201ENSMUST00000020238 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim11Q99PQ2 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim11Q99PQ2 Cbarp-215ENSMUST00000170219 2941 ntAPPRIS P2 TSL 5 BASIC16.61■□□□□ 0.25
Trim11Q99PQ2 Mettl27-203ENSMUST00000111218 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim11Q99PQ2 Msantd3-202ENSMUST00000064807 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim11Q99PQ2 Npnt-204ENSMUST00000117164 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim11Q99PQ2 Hps1-204ENSMUST00000160455 2952 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim11Q99PQ2 Josd1-201ENSMUST00000023061 3394 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim11Q99PQ2 Fbxl19-207ENSMUST00000206893 3449 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
Trim11Q99PQ2 Wbp2-201ENSMUST00000074628 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim11Q99PQ2 Zswim8-204ENSMUST00000223840 5674 ntAPPRIS ALT2 BASIC16.61■□□□□ 0.25
Trim11Q99PQ2 Tmem59l-201ENSMUST00000045286 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim11Q99PQ2 Dab1-203ENSMUST00000106830 5278 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim11Q99PQ2 Asah1-201ENSMUST00000034000 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim11Q99PQ2 Sh2b2-201ENSMUST00000005188 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim11Q99PQ2 Fbxo41-201ENSMUST00000159062 6505 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim11Q99PQ2 Lrch4-202ENSMUST00000175968 2036 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
Trim11Q99PQ2 Pcyox1l-201ENSMUST00000025472 2017 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim11Q99PQ2 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim11Q99PQ2 Dym-201ENSMUST00000039608 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim11Q99PQ2 Gm10710-201ENSMUST00000047876 3971 ntBASIC16.6■□□□□ 0.25
Trim11Q99PQ2 4921514A10Rik-201ENSMUST00000181450 2114 ntTSL 5 BASIC16.6■□□□□ 0.25
Trim11Q99PQ2 Ggn-205ENSMUST00000209019 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim11Q99PQ2 Gm21983-201ENSMUST00000154724 1690 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
Trim11Q99PQ2 Zfp668-204ENSMUST00000106263 3132 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim11Q99PQ2 Atp2a3-201ENSMUST00000021142 4593 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim11Q99PQ2 AC167013.2-201ENSMUST00000228520 2684 ntBASIC16.6■□□□□ 0.25
Trim11Q99PQ2 Thap7-201ENSMUST00000100125 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim11Q99PQ2 Dhdds-203ENSMUST00000105886 1015 ntTSL 5 BASIC16.6■□□□□ 0.25
Trim11Q99PQ2 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Trim11Q99PQ2 Slc7a10-203ENSMUST00000135452 629 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Trim11Q99PQ2 Prr3-202ENSMUST00000165613 767 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Trim11Q99PQ2 Gm7229-201ENSMUST00000214719 1007 ntBASIC16.6■□□□□ 0.25
Trim11Q99PQ2 AC164441.1-201ENSMUST00000221369 1004 ntTSL 5 BASIC16.6■□□□□ 0.25
Trim11Q99PQ2 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
Trim11Q99PQ2 AC154572.2-201ENSMUST00000225105 997 ntBASIC16.6■□□□□ 0.25
Trim11Q99PQ2 AC159295.1-201ENSMUST00000225326 940 ntBASIC16.6■□□□□ 0.25
Trim11Q99PQ2 Vps25-202ENSMUST00000042477 1106 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim11Q99PQ2 Aifm3-202ENSMUST00000115685 2357 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim11Q99PQ2 Col4a1-201ENSMUST00000033898 6615 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim11Q99PQ2 Egfl7-202ENSMUST00000102907 1372 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim11Q99PQ2 Fbxo15-204ENSMUST00000224467 1908 ntAPPRIS ALT2 BASIC16.6■□□□□ 0.25
Trim11Q99PQ2 Gstm7-201ENSMUST00000004137 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim11Q99PQ2 Vdac3-201ENSMUST00000009036 1354 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim11Q99PQ2 Vta1-205ENSMUST00000154132 1974 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim11Q99PQ2 Piezo1-209ENSMUST00000156333 8219 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim11Q99PQ2 Piezo1-201ENSMUST00000067252 8216 ntAPPRIS P2 TSL 5 BASIC16.6■□□□□ 0.25
Trim11Q99PQ2 Luc7l-203ENSMUST00000119928 1441 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
Trim11Q99PQ2 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim11Q99PQ2 Kif3a-201ENSMUST00000057330 2290 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Trim11Q99PQ2 Gatm-201ENSMUST00000028624 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trim11Q99PQ2 AC140354.1-201ENSMUST00000219499 2425 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Trim11Q99PQ2 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trim11Q99PQ2 Gm4081-201ENSMUST00000195287 1838 ntBASIC16.59■□□□□ 0.25
Trim11Q99PQ2 Trim63-201ENSMUST00000030638 1855 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
Trim11Q99PQ2 AU040320-201ENSMUST00000047431 4384 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trim11Q99PQ2 Nr2e3-201ENSMUST00000034831 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trim11Q99PQ2 Srcin1-202ENSMUST00000107593 3733 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
Trim11Q99PQ2 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC16.59■□□□□ 0.25
Trim11Q99PQ2 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC16.59■□□□□ 0.25
Trim11Q99PQ2 Sox2ot-202ENSMUST00000196058 753 ntTSL 3 BASIC16.59■□□□□ 0.25
Trim11Q99PQ2 Gm45747-201ENSMUST00000212203 999 ntBASIC16.59■□□□□ 0.25
Trim11Q99PQ2 Gm9182-201ENSMUST00000217829 639 ntBASIC16.59■□□□□ 0.25
Trim11Q99PQ2 Hcrt-201ENSMUST00000055083 586 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trim11Q99PQ2 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC16.59■□□□□ 0.25
Trim11Q99PQ2 Dmrt1-202ENSMUST00000087525 1130 ntTSL 5 BASIC16.59■□□□□ 0.25
Trim11Q99PQ2 Olfr1372-ps1-202ENSMUST00000203403 9812 ntTSL 5 BASIC16.59■□□□□ 0.25
Trim11Q99PQ2 Elfn2-201ENSMUST00000088592 4846 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trim11Q99PQ2 Usp51-201ENSMUST00000095755 2204 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trim11Q99PQ2 Mapt-203ENSMUST00000106989 2250 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
Trim11Q99PQ2 Rasal3-204ENSMUST00000135618 3293 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
Trim11Q99PQ2 Gm17619-201ENSMUST00000180625 1449 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Trim11Q99PQ2 Ifrd1-201ENSMUST00000001672 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trim11Q99PQ2 Selenon-201ENSMUST00000060435 3445 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
Trim11Q99PQ2 Dnm1-217ENSMUST00000202578 2820 ntAPPRIS P2 TSL 5 BASIC16.59■□□□□ 0.25
Trim11Q99PQ2 Vps53-201ENSMUST00000056601 2833 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trim11Q99PQ2 9930104L06Rik-201ENSMUST00000094769 2911 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Trim11Q99PQ2 9130017K11Rik-202ENSMUST00000135670 3338 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
Trim11Q99PQ2 Clip2-201ENSMUST00000036999 4893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
Trim11Q99PQ2 Rara-203ENSMUST00000107474 2380 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
Trim11Q99PQ2 Lifr-201ENSMUST00000067190 4143 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
Trim11Q99PQ2 Fam189b-202ENSMUST00000117278 2593 ntTSL 5 BASIC16.58■□□□□ 0.25
Trim11Q99PQ2 Ifnar2-202ENSMUST00000089042 2580 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
Trim11Q99PQ2 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 63.7 ms