Protein–RNA interactions for Protein: Q99LM2

Cdk5rap3, CDK5 regulatory subunit-associated protein 3, mousemouse

Predictions only

Length 503 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdk5rap3Q99LM2 Pomgnt1-202ENSMUST00000106496 2613 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Cdk5rap3Q99LM2 Ralgapb-203ENSMUST00000109486 8383 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdk5rap3Q99LM2 Ssbp2-201ENSMUST00000004094 3957 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdk5rap3Q99LM2 Gm13344-201ENSMUST00000137714 1557 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Cdk5rap3Q99LM2 Mdfic-203ENSMUST00000125326 3635 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Cdk5rap3Q99LM2 Fstl4-201ENSMUST00000036796 4380 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdk5rap3Q99LM2 Tuft1-203ENSMUST00000196655 2156 ntTSL 5 BASIC15.11■□□□□ 0.01
Cdk5rap3Q99LM2 Cdt1-201ENSMUST00000006760 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdk5rap3Q99LM2 Las1l-202ENSMUST00000113864 2581 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Cdk5rap3Q99LM2 Hnrnpa2b1-204ENSMUST00000203220 1638 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdk5rap3Q99LM2 Pxylp1-204ENSMUST00000120101 3189 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdk5rap3Q99LM2 Slc39a3-202ENSMUST00000117276 3796 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdk5rap3Q99LM2 Ccnj-202ENSMUST00000119316 3763 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
Cdk5rap3Q99LM2 Ece2-204ENSMUST00000133344 3042 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdk5rap3Q99LM2 9330182L06Rik-202ENSMUST00000115348 3403 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdk5rap3Q99LM2 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC15.11■□□□□ 0.01
Cdk5rap3Q99LM2 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC15.11■□□□□ 0.01
Cdk5rap3Q99LM2 Psma6-204ENSMUST00000163070 787 ntTSL 5 BASIC15.11■□□□□ 0.01
Cdk5rap3Q99LM2 Mir8098-201ENSMUST00000184011 137 ntBASIC15.11■□□□□ 0.01
Cdk5rap3Q99LM2 Rps2-ps5-201ENSMUST00000184266 849 ntBASIC15.11■□□□□ 0.01
Cdk5rap3Q99LM2 Spr-ps1-202ENSMUST00000186281 706 ntTSL 2 BASIC15.11■□□□□ 0.01
Cdk5rap3Q99LM2 AC131709.1-201ENSMUST00000224731 1180 ntBASIC15.11■□□□□ 0.01
Cdk5rap3Q99LM2 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdk5rap3Q99LM2 2700080J24Rik-201ENSMUST00000205314 1662 ntBASIC15.11■□□□□ 0.01
Cdk5rap3Q99LM2 Mbp-204ENSMUST00000080658 2063 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Cdk5rap3Q99LM2 Egr1-201ENSMUST00000064795 4484 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdk5rap3Q99LM2 Ush1g-201ENSMUST00000103037 3306 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdk5rap3Q99LM2 Sirpa-202ENSMUST00000099113 3342 ntTSL 3 BASIC15.11■□□□□ 0.01
Cdk5rap3Q99LM2 Pglyrp2-201ENSMUST00000114455 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdk5rap3Q99LM2 Hdac8-201ENSMUST00000087916 1936 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdk5rap3Q99LM2 AI606473-201ENSMUST00000177201 1731 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Cdk5rap3Q99LM2 Foxj3-201ENSMUST00000044564 4789 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdk5rap3Q99LM2 Psmb10-201ENSMUST00000034369 1311 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdk5rap3Q99LM2 Flt4-201ENSMUST00000020617 6255 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdk5rap3Q99LM2 Clip2-201ENSMUST00000036999 4893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdk5rap3Q99LM2 AC126250.1-201ENSMUST00000228343 1768 ntBASIC15.11■□□□□ 0.01
Cdk5rap3Q99LM2 Ntf3-202ENSMUST00000112244 1399 ntAPPRIS ALT1 TSL 3 BASIC15.11■□□□□ 0.01
Cdk5rap3Q99LM2 Ercc1-201ENSMUST00000003645 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdk5rap3Q99LM2 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdk5rap3Q99LM2 Rps6ka5-209ENSMUST00000222731 5642 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdk5rap3Q99LM2 Proser2-202ENSMUST00000114942 4398 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cdk5rap3Q99LM2 Leng9-201ENSMUST00000058358 2460 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
Cdk5rap3Q99LM2 Grm7-201ENSMUST00000071076 3127 ntAPPRIS ALT1 TSL 5 BASIC15.1■□□□□ 0.01
Cdk5rap3Q99LM2 A230072C01Rik-202ENSMUST00000136447 1412 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Cdk5rap3Q99LM2 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cdk5rap3Q99LM2 Apbb1-215ENSMUST00000190369 1882 ntTSL 5 BASIC15.1■□□□□ 0.01
Cdk5rap3Q99LM2 Gm21983-201ENSMUST00000154724 1690 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
Cdk5rap3Q99LM2 Guca1b-201ENSMUST00000024774 1668 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cdk5rap3Q99LM2 C230004F18Rik-203ENSMUST00000137153 2138 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Cdk5rap3Q99LM2 Plscr3-201ENSMUST00000019605 1927 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cdk5rap3Q99LM2 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cdk5rap3Q99LM2 Gm12981-201ENSMUST00000131733 622 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Cdk5rap3Q99LM2 Slc19a2-204ENSMUST00000169394 894 ntTSL 5 BASIC15.1■□□□□ 0.01
Cdk5rap3Q99LM2 Ndufs6-204ENSMUST00000223293 757 ntTSL 2 BASIC15.1■□□□□ 0.01
Cdk5rap3Q99LM2 1700080E11Rik-201ENSMUST00000035180 883 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cdk5rap3Q99LM2 Psma5-201ENSMUST00000090569 1239 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cdk5rap3Q99LM2 Fbln7-201ENSMUST00000028864 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cdk5rap3Q99LM2 Slc8a3-201ENSMUST00000064594 4379 ntAPPRIS ALT1 TSL 5 BASIC15.1■□□□□ 0.01
Cdk5rap3Q99LM2 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cdk5rap3Q99LM2 Pctp-201ENSMUST00000020864 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cdk5rap3Q99LM2 Gm11946-201ENSMUST00000123459 3941 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Cdk5rap3Q99LM2 Tex13a-201ENSMUST00000096314 1317 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cdk5rap3Q99LM2 Scap-201ENSMUST00000098350 4227 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cdk5rap3Q99LM2 Epb41l1-205ENSMUST00000109574 5904 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Cdk5rap3Q99LM2 Myo1c-204ENSMUST00000108431 4718 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cdk5rap3Q99LM2 Gm8096-201ENSMUST00000209921 1591 ntBASIC15.1■□□□□ 0.01
Cdk5rap3Q99LM2 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Cdk5rap3Q99LM2 Col3a1-201ENSMUST00000087883 5564 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cdk5rap3Q99LM2 Pxn-213ENSMUST00000202564 2126 ntTSL 5 BASIC15.1■□□□□ 0.01
Cdk5rap3Q99LM2 Pard3-202ENSMUST00000079777 3394 ntTSL 5 BASIC15.1■□□□□ 0.01
Cdk5rap3Q99LM2 Sf3a1-201ENSMUST00000002198 4920 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cdk5rap3Q99LM2 Ralyl-206ENSMUST00000193117 2933 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
Cdk5rap3Q99LM2 Spcs2-201ENSMUST00000036274 2909 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cdk5rap3Q99LM2 Raver1-202ENSMUST00000217282 4234 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
Cdk5rap3Q99LM2 Myl12a-206ENSMUST00000148960 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cdk5rap3Q99LM2 Ggh-201ENSMUST00000098242 1965 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cdk5rap3Q99LM2 Fubp1-206ENSMUST00000196739 2526 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cdk5rap3Q99LM2 Slc43a1-201ENSMUST00000028469 2539 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cdk5rap3Q99LM2 Ino80-202ENSMUST00000110808 3928 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Cdk5rap3Q99LM2 Zfp318-204ENSMUST00000138127 3936 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Cdk5rap3Q99LM2 Rab9b-201ENSMUST00000058814 3980 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cdk5rap3Q99LM2 Pim1-201ENSMUST00000024811 2638 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cdk5rap3Q99LM2 Foxi1-201ENSMUST00000060271 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cdk5rap3Q99LM2 Sema4b-204ENSMUST00000205822 3760 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cdk5rap3Q99LM2 Camsap2-202ENSMUST00000192001 6329 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cdk5rap3Q99LM2 Arl4a-201ENSMUST00000101472 1200 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cdk5rap3Q99LM2 Scml4-203ENSMUST00000105495 1033 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Cdk5rap3Q99LM2 Mcub-204ENSMUST00000153506 1005 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Cdk5rap3Q99LM2 Csrp3-202ENSMUST00000167786 899 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cdk5rap3Q99LM2 4930458A03Rik-201ENSMUST00000198197 961 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Cdk5rap3Q99LM2 AC155729.1-201ENSMUST00000227758 544 ntBASIC15.09■□□□□ 0.01
Cdk5rap3Q99LM2 Rph3al-202ENSMUST00000066504 988 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cdk5rap3Q99LM2 4930431F12Rik-201ENSMUST00000079389 429 ntTSL 5 BASIC15.09■□□□□ 0.01
Cdk5rap3Q99LM2 Tubb3-201ENSMUST00000071134 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cdk5rap3Q99LM2 Rasl12-202ENSMUST00000165682 1903 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Cdk5rap3Q99LM2 Dlx6-202ENSMUST00000160937 2216 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cdk5rap3Q99LM2 Ly6h-207ENSMUST00000163116 2801 ntAPPRIS ALT1 TSL 2 BASIC15.09■□□□□ 0.01
Cdk5rap3Q99LM2 Pcdh10-201ENSMUST00000166126 7081 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Cdk5rap3Q99LM2 Trim32-201ENSMUST00000050850 3194 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cdk5rap3Q99LM2 Gm43951-201ENSMUST00000204457 2889 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 17.5 ms