Protein–RNA interactions for Protein: Q8K445

Clrn1, Clarin-1, mousemouse

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn1Q8K445 Dnase1l2-202ENSMUST00000119932 1629 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Clrn1Q8K445 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Clrn1Q8K445 Fuz-213ENSMUST00000209039 1453 ntTSL 5 BASIC13.75□□□□□ -0.21
Clrn1Q8K445 Slc35e2-201ENSMUST00000043829 2910 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Clrn1Q8K445 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Clrn1Q8K445 Slc41a1-201ENSMUST00000086559 4697 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Clrn1Q8K445 Nt5e-201ENSMUST00000034992 3995 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Clrn1Q8K445 Chd1-202ENSMUST00000024627 7916 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Clrn1Q8K445 Slc33a1-202ENSMUST00000160883 1978 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
Clrn1Q8K445 Cryzl1-201ENSMUST00000073466 1965 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Clrn1Q8K445 Zfp57-202ENSMUST00000089968 1991 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Clrn1Q8K445 Dio1-202ENSMUST00000106748 396 ntTSL 5 BASIC13.75□□□□□ -0.21
Clrn1Q8K445 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC13.75□□□□□ -0.21
Clrn1Q8K445 Rps13-ps4-201ENSMUST00000117927 456 ntBASIC13.75□□□□□ -0.21
Clrn1Q8K445 Rps13-ps5-201ENSMUST00000117939 456 ntBASIC13.75□□□□□ -0.21
Clrn1Q8K445 Pfn2-203ENSMUST00000120289 905 ntTSL 2 BASIC13.75□□□□□ -0.21
Clrn1Q8K445 Gm15483-201ENSMUST00000120338 456 ntBASIC13.75□□□□□ -0.21
Clrn1Q8K445 Mpc1-205ENSMUST00000142594 961 ntTSL 5 BASIC13.75□□□□□ -0.21
Clrn1Q8K445 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC13.75□□□□□ -0.21
Clrn1Q8K445 Ndufa1-201ENSMUST00000016571 419 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Clrn1Q8K445 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Clrn1Q8K445 Gm4691-201ENSMUST00000182339 1000 ntBASIC13.75□□□□□ -0.21
Clrn1Q8K445 Psmg3-202ENSMUST00000182602 733 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Clrn1Q8K445 4930500L23Rik-201ENSMUST00000198000 747 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Clrn1Q8K445 Gm2451-201ENSMUST00000199447 999 ntBASIC13.75□□□□□ -0.21
Clrn1Q8K445 Gm10290-201ENSMUST00000200451 999 ntBASIC13.75□□□□□ -0.21
Clrn1Q8K445 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC13.75□□□□□ -0.21
Clrn1Q8K445 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Clrn1Q8K445 1700021F07Rik-201ENSMUST00000029023 646 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Clrn1Q8K445 Spr-201ENSMUST00000045986 1230 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Clrn1Q8K445 Rph3al-202ENSMUST00000066504 988 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Clrn1Q8K445 Spred2-202ENSMUST00000093299 4449 ntTSL 5 BASIC13.75□□□□□ -0.21
Clrn1Q8K445 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Clrn1Q8K445 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Clrn1Q8K445 Tbk1-201ENSMUST00000020316 3024 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Clrn1Q8K445 Col1a1-201ENSMUST00000001547 5930 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Clrn1Q8K445 Rexo4-202ENSMUST00000114020 2278 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Clrn1Q8K445 Cadm2-203ENSMUST00000120898 2768 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Clrn1Q8K445 Trp53bp2-201ENSMUST00000117245 4361 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
Clrn1Q8K445 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Clrn1Q8K445 Ric8b-201ENSMUST00000038523 3069 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Clrn1Q8K445 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
Clrn1Q8K445 Rnf4-207ENSMUST00000182709 3046 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Clrn1Q8K445 Scrt1-201ENSMUST00000096365 4010 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Clrn1Q8K445 Rnf152-201ENSMUST00000058688 8492 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Clrn1Q8K445 Rims1-201ENSMUST00000081544 5954 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
Clrn1Q8K445 Lancl1-202ENSMUST00000113979 4461 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Clrn1Q8K445 Rrp1b-201ENSMUST00000081339 4874 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Clrn1Q8K445 Tchp-201ENSMUST00000094441 2882 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Clrn1Q8K445 Cct6b-202ENSMUST00000100722 1871 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Clrn1Q8K445 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Clrn1Q8K445 Egfl7-202ENSMUST00000102907 1372 ntAPPRIS P4 TSL 1 (best) BASIC13.74□□□□□ -0.21
Clrn1Q8K445 Large2-202ENSMUST00000090582 2291 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Clrn1Q8K445 Klhl26-202ENSMUST00000166976 2734 ntTSL 2 BASIC13.74□□□□□ -0.21
Clrn1Q8K445 Gm26850-201ENSMUST00000181653 2669 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Clrn1Q8K445 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Clrn1Q8K445 Slc8a3-201ENSMUST00000064594 4379 ntAPPRIS ALT1 TSL 5 BASIC13.74□□□□□ -0.21
Clrn1Q8K445 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Clrn1Q8K445 Ablim2-205ENSMUST00000114205 2579 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
Clrn1Q8K445 Fkbp10-201ENSMUST00000001595 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Clrn1Q8K445 Gm43509-201ENSMUST00000196551 2594 ntBASIC13.74□□□□□ -0.21
Clrn1Q8K445 Gm4995-201ENSMUST00000117247 432 ntBASIC13.74□□□□□ -0.21
Clrn1Q8K445 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC13.74□□□□□ -0.21
Clrn1Q8K445 A530058N18Rik-205ENSMUST00000143993 550 ntTSL 3 BASIC13.74□□□□□ -0.21
Clrn1Q8K445 Gm25911-201ENSMUST00000157621 56 ntBASIC13.74□□□□□ -0.21
Clrn1Q8K445 Gpr146-202ENSMUST00000053120 1040 ntBASIC13.74□□□□□ -0.21
Clrn1Q8K445 Slbp-202ENSMUST00000075670 1027 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Clrn1Q8K445 Raver1-202ENSMUST00000217282 4234 ntAPPRIS ALT2 TSL 2 BASIC13.74□□□□□ -0.21
Clrn1Q8K445 Kpnb1-201ENSMUST00000001479 5894 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Clrn1Q8K445 Slc39a14-201ENSMUST00000022688 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Clrn1Q8K445 Eif2b2-201ENSMUST00000004910 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Clrn1Q8K445 Arhgap40-203ENSMUST00000165398 2028 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
Clrn1Q8K445 Sphk1-205ENSMUST00000106387 1957 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
Clrn1Q8K445 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
Clrn1Q8K445 Disc1-207ENSMUST00000121953 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Clrn1Q8K445 Ccnj-202ENSMUST00000119316 3763 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
Clrn1Q8K445 Grin3a-202ENSMUST00000093859 7491 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Clrn1Q8K445 Rfx5-203ENSMUST00000107254 4450 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Clrn1Q8K445 Ifnz-201ENSMUST00000105144 1462 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
Clrn1Q8K445 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Clrn1Q8K445 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC13.74□□□□□ -0.21
Clrn1Q8K445 Gm11960-202ENSMUST00000181063 2858 ntBASIC13.73□□□□□ -0.21
Clrn1Q8K445 Tpr-201ENSMUST00000119161 7480 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
Clrn1Q8K445 AC126250.1-201ENSMUST00000228343 1768 ntBASIC13.73□□□□□ -0.21
Clrn1Q8K445 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
Clrn1Q8K445 Fen1-204ENSMUST00000156291 2373 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
Clrn1Q8K445 Gm17396-201ENSMUST00000172075 1655 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Clrn1Q8K445 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Clrn1Q8K445 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Clrn1Q8K445 Necap2-201ENSMUST00000030760 1906 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Clrn1Q8K445 Asphd1-202ENSMUST00000106339 518 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
Clrn1Q8K445 Pcp2-203ENSMUST00000133459 470 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Clrn1Q8K445 Gm11615-201ENSMUST00000156205 818 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Clrn1Q8K445 Tsen15-205ENSMUST00000162371 431 ntTSL 5 BASIC13.73□□□□□ -0.21
Clrn1Q8K445 Ly6g6e-204ENSMUST00000172959 501 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Clrn1Q8K445 Gm20509-201ENSMUST00000174203 1016 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
Clrn1Q8K445 Gm2213-201ENSMUST00000197485 688 ntBASIC13.73□□□□□ -0.21
Clrn1Q8K445 Gm20553-201ENSMUST00000204205 844 ntBASIC13.73□□□□□ -0.21
Clrn1Q8K445 Ndufaf2-202ENSMUST00000223734 556 ntBASIC13.73□□□□□ -0.21
Clrn1Q8K445 AC225888.1-201ENSMUST00000227184 728 ntBASIC13.73□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 28.5 ms