Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Zkscan17-201ENSMUST00000013262 4064 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Ccdc40Q8BI79 Rimkla-201ENSMUST00000049994 4097 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Ccdc40Q8BI79 Ntn4-201ENSMUST00000020204 3646 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Ccdc40Q8BI79 Ptpa-208ENSMUST00000131476 989 ntTSL 2 BASIC15.24■□□□□ 0.03
Ccdc40Q8BI79 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Ccdc40Q8BI79 Rab10os-206ENSMUST00000179908 746 ntTSL 5 BASIC15.24■□□□□ 0.03
Ccdc40Q8BI79 Gm27300-201ENSMUST00000184085 97 ntBASIC15.24■□□□□ 0.03
Ccdc40Q8BI79 Gm27335-201ENSMUST00000184758 97 ntBASIC15.24■□□□□ 0.03
Ccdc40Q8BI79 Il17b-201ENSMUST00000025471 692 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Ccdc40Q8BI79 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Ccdc40Q8BI79 Ndufv3-202ENSMUST00000064798 485 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Ccdc40Q8BI79 Chchd2-201ENSMUST00000094280 915 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Ccdc40Q8BI79 Clip2-201ENSMUST00000036999 4893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Ccdc40Q8BI79 Plxna1-202ENSMUST00000163139 9034 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Ccdc40Q8BI79 Syt13-201ENSMUST00000028648 3761 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Ccdc40Q8BI79 Abi2-206ENSMUST00000188594 1658 ntTSL 5 BASIC15.24■□□□□ 0.03
Ccdc40Q8BI79 Vopp1-202ENSMUST00000127485 2908 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Ccdc40Q8BI79 Fbxw2-205ENSMUST00000113078 1872 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Ccdc40Q8BI79 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Ccdc40Q8BI79 Gm15512-201ENSMUST00000137359 2257 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Ccdc40Q8BI79 Wdr90-201ENSMUST00000079461 5991 ntAPPRIS P2 TSL 5 BASIC15.24■□□□□ 0.03
Ccdc40Q8BI79 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC15.24■□□□□ 0.03
Ccdc40Q8BI79 Ankrd33b-204ENSMUST00000123325 7466 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Ccdc40Q8BI79 Ptprn2-201ENSMUST00000070733 3201 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Ccdc40Q8BI79 Ctnnb1-201ENSMUST00000007130 3623 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Ccdc40Q8BI79 Mcrs1-202ENSMUST00000163506 1795 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Ccdc40Q8BI79 Pus1-204ENSMUST00000112426 1389 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Ccdc40Q8BI79 Repin1-201ENSMUST00000009420 3145 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Ccdc40Q8BI79 Gm14780-201ENSMUST00000118387 2737 ntBASIC15.23■□□□□ 0.03
Ccdc40Q8BI79 Dnm1l-201ENSMUST00000023477 4017 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Ccdc40Q8BI79 Dnase2a-201ENSMUST00000003910 1715 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Ccdc40Q8BI79 Adam22-207ENSMUST00000115388 9161 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
Ccdc40Q8BI79 6430710C18Rik-203ENSMUST00000136807 1540 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Ccdc40Q8BI79 Cadps2-213ENSMUST00000166458 4598 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
Ccdc40Q8BI79 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Ccdc40Q8BI79 Vamp8-202ENSMUST00000142613 2076 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Ccdc40Q8BI79 Gm21009-201ENSMUST00000197169 1669 ntBASIC15.23■□□□□ 0.03
Ccdc40Q8BI79 Ubqln2-201ENSMUST00000060714 3344 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
Ccdc40Q8BI79 Dek-201ENSMUST00000021807 2556 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Ccdc40Q8BI79 Gm12008-201ENSMUST00000117791 755 ntBASIC15.23■□□□□ 0.03
Ccdc40Q8BI79 Gemin7-204ENSMUST00000122055 609 ntAPPRIS P1 TSL 3 BASIC15.23■□□□□ 0.03
Ccdc40Q8BI79 Grtp1-201ENSMUST00000165605 1271 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Ccdc40Q8BI79 Timm23-206ENSMUST00000170331 777 ntTSL 3 BASIC15.23■□□□□ 0.03
Ccdc40Q8BI79 Spr-ps1-202ENSMUST00000186281 706 ntTSL 2 BASIC15.23■□□□□ 0.03
Ccdc40Q8BI79 Avpi1-201ENSMUST00000018965 1044 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Ccdc40Q8BI79 Gm15406-202ENSMUST00000202229 767 ntTSL 2 BASIC15.23■□□□□ 0.03
Ccdc40Q8BI79 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC15.23■□□□□ 0.03
Ccdc40Q8BI79 Ube2d3-210ENSMUST00000197539 2515 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Ccdc40Q8BI79 Sox5-202ENSMUST00000077160 2526 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Ccdc40Q8BI79 Krt25-201ENSMUST00000038004 1989 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Ccdc40Q8BI79 Lysmd3-201ENSMUST00000049055 2338 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Ccdc40Q8BI79 Mtfp1-201ENSMUST00000004868 1411 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Ccdc40Q8BI79 Catip-201ENSMUST00000097697 2101 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Ccdc40Q8BI79 Zfp703-202ENSMUST00000154256 3152 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Ccdc40Q8BI79 Pld3-201ENSMUST00000117095 2282 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Ccdc40Q8BI79 Ptp4a3-204ENSMUST00000167582 2640 ntTSL 5 BASIC15.23■□□□□ 0.03
Ccdc40Q8BI79 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Ccdc40Q8BI79 Ephb2-201ENSMUST00000059287 4804 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
Ccdc40Q8BI79 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Ccdc40Q8BI79 Fbxl5-207ENSMUST00000124610 2306 ntTSL 5 BASIC15.22■□□□□ 0.03
Ccdc40Q8BI79 1500011B03Rik-202ENSMUST00000112160 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Ccdc40Q8BI79 Cobl-201ENSMUST00000046755 5615 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Ccdc40Q8BI79 Noct-203ENSMUST00000167780 2992 ntAPPRIS P2 TSL 5 BASIC15.22■□□□□ 0.03
Ccdc40Q8BI79 Rbm47-201ENSMUST00000094756 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Ccdc40Q8BI79 5033426O07Rik-202ENSMUST00000212635 2110 ntTSL 5 BASIC15.22■□□□□ 0.03
Ccdc40Q8BI79 Dgke-201ENSMUST00000000285 5208 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Ccdc40Q8BI79 Dmrta1-201ENSMUST00000052478 4079 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Ccdc40Q8BI79 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Ccdc40Q8BI79 Sacm1l-201ENSMUST00000026270 3558 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Ccdc40Q8BI79 Gm38058-201ENSMUST00000194323 4368 ntBASIC15.22■□□□□ 0.03
Ccdc40Q8BI79 Mier2-201ENSMUST00000062855 2562 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Ccdc40Q8BI79 A730062M13Rik-201ENSMUST00000192843 1910 ntBASIC15.22■□□□□ 0.03
Ccdc40Q8BI79 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Ccdc40Q8BI79 Dsn1-201ENSMUST00000103129 2080 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Ccdc40Q8BI79 Ppp2r1b-211ENSMUST00000176798 2074 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Ccdc40Q8BI79 Rpl13-ps5-201ENSMUST00000117813 630 ntBASIC15.22■□□□□ 0.03
Ccdc40Q8BI79 Gm12134-201ENSMUST00000122109 520 ntBASIC15.22■□□□□ 0.03
Ccdc40Q8BI79 Timm23-201ENSMUST00000013845 1173 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Ccdc40Q8BI79 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Ccdc40Q8BI79 Gm20324-201ENSMUST00000186291 1118 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Ccdc40Q8BI79 Zfp787-206ENSMUST00000208746 535 ntTSL 2 BASIC15.22■□□□□ 0.03
Ccdc40Q8BI79 Timm9-205ENSMUST00000221178 529 ntTSL 3 BASIC15.22■□□□□ 0.03
Ccdc40Q8BI79 Ociad2-204ENSMUST00000200830 2384 ntTSL 3 BASIC15.22■□□□□ 0.03
Ccdc40Q8BI79 Gnb2-212ENSMUST00000150063 1569 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Ccdc40Q8BI79 Tbx3-201ENSMUST00000018748 4856 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Ccdc40Q8BI79 Slc2a6-202ENSMUST00000102890 1887 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Ccdc40Q8BI79 B230217C12Rik-203ENSMUST00000164364 1859 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Ccdc40Q8BI79 Gm5096-201ENSMUST00000091776 1858 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Ccdc40Q8BI79 Prox1-201ENSMUST00000010319 3285 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Ccdc40Q8BI79 Slc24a3-202ENSMUST00000110007 4048 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Ccdc40Q8BI79 Kpnb1-201ENSMUST00000001479 5894 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Ccdc40Q8BI79 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Ccdc40Q8BI79 Kdm8-201ENSMUST00000033010 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Ccdc40Q8BI79 Gm19863-201ENSMUST00000192480 2218 ntBASIC15.21■□□□□ 0.03
Ccdc40Q8BI79 AC025913.2-201ENSMUST00000220136 1766 ntBASIC15.21■□□□□ 0.03
Ccdc40Q8BI79 Rps6ka5-201ENSMUST00000043599 4406 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Ccdc40Q8BI79 Sox17-206ENSMUST00000192650 3242 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Ccdc40Q8BI79 Myef2-207ENSMUST00000147105 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Ccdc40Q8BI79 Lmna-203ENSMUST00000120377 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Ccdc40Q8BI79 Srgn-204ENSMUST00000160987 1727 ntAPPRIS P1 TSL 3 BASIC15.21■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 53.3 ms