Protein–RNA interactions for Protein: Q6P9L4

Usp49, Ubiquitin carboxyl-terminal hydrolase 49, mousemouse

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp49Q6P9L4 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Usp49Q6P9L4 Dpp7-201ENSMUST00000028332 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Usp49Q6P9L4 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC16.33■□□□□ 0.2
Usp49Q6P9L4 Opn5-201ENSMUST00000068355 1824 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Usp49Q6P9L4 Tomm34-202ENSMUST00000109384 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Usp49Q6P9L4 Pex3-202ENSMUST00000105539 1961 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Usp49Q6P9L4 Mbp-202ENSMUST00000062446 2186 ntAPPRIS P4 TSL 1 (best) BASIC16.33■□□□□ 0.2
Usp49Q6P9L4 Rbbp8nl-201ENSMUST00000038529 2319 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Usp49Q6P9L4 Spryd3-203ENSMUST00000154032 2456 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
Usp49Q6P9L4 Miga1-202ENSMUST00000073089 4965 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Usp49Q6P9L4 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Usp49Q6P9L4 Nfatc4-204ENSMUST00000226357 2680 ntAPPRIS ALT2 BASIC16.32■□□□□ 0.2
Usp49Q6P9L4 Hp1bp3-202ENSMUST00000097836 3113 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Usp49Q6P9L4 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Usp49Q6P9L4 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Usp49Q6P9L4 Fgd1-201ENSMUST00000026296 4001 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Usp49Q6P9L4 Morc4-201ENSMUST00000033811 4412 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Usp49Q6P9L4 D130052B06Rik-201ENSMUST00000101371 2295 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Usp49Q6P9L4 Rabepk-202ENSMUST00000113086 1106 ntTSL 5 BASIC16.32■□□□□ 0.2
Usp49Q6P9L4 Gm6973-201ENSMUST00000117080 721 ntBASIC16.32■□□□□ 0.2
Usp49Q6P9L4 Gm13496-201ENSMUST00000141133 1165 ntTSL 2 BASIC16.32■□□□□ 0.2
Usp49Q6P9L4 Gbe1-207ENSMUST00000171132 3303 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Usp49Q6P9L4 Apbb1-215ENSMUST00000190369 1882 ntTSL 5 BASIC16.32■□□□□ 0.2
Usp49Q6P9L4 Stard3nl-209ENSMUST00000221380 1268 ntTSL 5 BASIC16.32■□□□□ 0.2
Usp49Q6P9L4 Cidea-201ENSMUST00000025404 1164 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Usp49Q6P9L4 Slc2a6-201ENSMUST00000045702 2138 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Usp49Q6P9L4 C1qtnf2-201ENSMUST00000057679 1211 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Usp49Q6P9L4 Gm10073-201ENSMUST00000073722 496 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
Usp49Q6P9L4 Rplp1-201ENSMUST00000008036 499 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Usp49Q6P9L4 Pgd-201ENSMUST00000084124 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Usp49Q6P9L4 Cbln4-201ENSMUST00000087950 2902 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Usp49Q6P9L4 Sacs-201ENSMUST00000089394 3345 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Usp49Q6P9L4 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Usp49Q6P9L4 Kctd3-201ENSMUST00000085678 3706 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Usp49Q6P9L4 Socs4-201ENSMUST00000065562 6877 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Usp49Q6P9L4 Mmp14-206ENSMUST00000225641 3238 ntBASIC16.32■□□□□ 0.2
Usp49Q6P9L4 Wac-201ENSMUST00000074919 3070 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Usp49Q6P9L4 Arid4b-204ENSMUST00000110536 5783 ntTSL 5 BASIC16.32■□□□□ 0.2
Usp49Q6P9L4 Avpr1a-201ENSMUST00000020323 2670 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Usp49Q6P9L4 Ociad2-205ENSMUST00000201908 2378 ntTSL 2 BASIC16.31■□□□□ 0.2
Usp49Q6P9L4 Scube3-201ENSMUST00000043503 6699 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Usp49Q6P9L4 Cdt1-201ENSMUST00000006760 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Usp49Q6P9L4 Srcin1-202ENSMUST00000107593 3733 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Usp49Q6P9L4 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Usp49Q6P9L4 Atf7-202ENSMUST00000108828 2887 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Usp49Q6P9L4 Gm16845-201ENSMUST00000180419 1415 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Usp49Q6P9L4 Wdr47-201ENSMUST00000051145 4222 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Usp49Q6P9L4 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Usp49Q6P9L4 Bag6-201ENSMUST00000025250 3858 ntAPPRIS P3 TSL 5 BASIC16.31■□□□□ 0.2
Usp49Q6P9L4 Gm38554-201ENSMUST00000201639 708 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Usp49Q6P9L4 Gm45098-201ENSMUST00000207179 657 ntBASIC16.31■□□□□ 0.2
Usp49Q6P9L4 Eef1akmt2-201ENSMUST00000033257 1107 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Usp49Q6P9L4 Lce3e-201ENSMUST00000098886 607 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
Usp49Q6P9L4 Fam19a4-201ENSMUST00000089295 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Usp49Q6P9L4 Raf1-201ENSMUST00000000451 3070 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Usp49Q6P9L4 Gatad2a-203ENSMUST00000177851 5007 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Usp49Q6P9L4 9930104L06Rik-201ENSMUST00000094769 2911 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Usp49Q6P9L4 Wbp2-201ENSMUST00000074628 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Usp49Q6P9L4 AC167013.2-201ENSMUST00000228520 2684 ntBASIC16.31■□□□□ 0.2
Usp49Q6P9L4 Txndc11-203ENSMUST00000118679 3523 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Usp49Q6P9L4 Trf-201ENSMUST00000035158 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Usp49Q6P9L4 Fam170b-201ENSMUST00000104926 1694 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
Usp49Q6P9L4 Pde3b-201ENSMUST00000032909 6573 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Usp49Q6P9L4 Cdcp2-202ENSMUST00000221740 1623 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Usp49Q6P9L4 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Usp49Q6P9L4 Traf2-201ENSMUST00000028311 3044 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Usp49Q6P9L4 Sgtb-201ENSMUST00000044385 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Usp49Q6P9L4 Ifnz-201ENSMUST00000105144 1462 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Usp49Q6P9L4 Atp4b-201ENSMUST00000033826 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Usp49Q6P9L4 Enpp1-203ENSMUST00000135846 2721 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Usp49Q6P9L4 Mtif2-202ENSMUST00000093239 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Usp49Q6P9L4 Psap-202ENSMUST00000105465 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Usp49Q6P9L4 Gm3252-201ENSMUST00000165619 1949 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Usp49Q6P9L4 Gm27177-203ENSMUST00000184034 1911 ntTSL 5 BASIC16.3■□□□□ 0.2
Usp49Q6P9L4 Ighv4-1-201ENSMUST00000103464 414 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Usp49Q6P9L4 Prmt7-203ENSMUST00000109297 1094 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Usp49Q6P9L4 Snu13-203ENSMUST00000166578 1061 ntTSL 2 BASIC16.3■□□□□ 0.2
Usp49Q6P9L4 Znrf1-213ENSMUST00000174333 515 ntTSL 3 BASIC16.3■□□□□ 0.2
Usp49Q6P9L4 Mir124-2hg-206ENSMUST00000189754 525 ntTSL 3 BASIC16.3■□□□□ 0.2
Usp49Q6P9L4 AC159635.2-201ENSMUST00000223092 817 ntTSL 5 BASIC16.3■□□□□ 0.2
Usp49Q6P9L4 Guca2b-201ENSMUST00000044426 605 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Usp49Q6P9L4 Gpr146-202ENSMUST00000053120 1040 ntBASIC16.3■□□□□ 0.2
Usp49Q6P9L4 Olfr324-201ENSMUST00000054683 1122 ntAPPRIS P2 BASIC16.3■□□□□ 0.2
Usp49Q6P9L4 Tst-201ENSMUST00000058659 1096 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Usp49Q6P9L4 Hes2-201ENSMUST00000030782 2521 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Usp49Q6P9L4 Ccnj-202ENSMUST00000119316 3763 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Usp49Q6P9L4 Tpd52-203ENSMUST00000091355 3081 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Usp49Q6P9L4 Nupr1l-201ENSMUST00000178355 1827 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Usp49Q6P9L4 Mdfic-203ENSMUST00000125326 3635 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Usp49Q6P9L4 Fgfr3-203ENSMUST00000114411 4225 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Usp49Q6P9L4 B4galnt1-201ENSMUST00000006914 2395 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Usp49Q6P9L4 Slc25a32-201ENSMUST00000022908 5905 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Usp49Q6P9L4 Pnkd-201ENSMUST00000027370 2937 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Usp49Q6P9L4 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
Usp49Q6P9L4 Cyp20a1-201ENSMUST00000060608 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Usp49Q6P9L4 Gm9252-201ENSMUST00000172364 1602 ntBASIC16.3■□□□□ 0.2
Usp49Q6P9L4 Plekha8-202ENSMUST00000119706 6739 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
Usp49Q6P9L4 Eif4a3-201ENSMUST00000026667 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Usp49Q6P9L4 Leng9-201ENSMUST00000058358 2460 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Usp49Q6P9L4 Phtf2-201ENSMUST00000118174 4840 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 26.5 ms