Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Apol7d-201ENSMUST00000097699 826 ntTSL 2 BASIC14.18□□□□□ -0.14
Col28a1Q2UY11 Tacc3-201ENSMUST00000074849 2669 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col28a1Q2UY11 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Col28a1Q2UY11 Siglecf-201ENSMUST00000012798 2510 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col28a1Q2UY11 Kcnq1-201ENSMUST00000009689 3029 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col28a1Q2UY11 Rbm33-202ENSMUST00000059644 9510 ntAPPRIS P2 TSL 5 BASIC14.18□□□□□ -0.14
Col28a1Q2UY11 Gm12503-201ENSMUST00000146576 3127 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Col28a1Q2UY11 Doc2b-201ENSMUST00000021209 4361 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col28a1Q2UY11 Mtrr-209ENSMUST00000223398 3861 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col28a1Q2UY11 Ttyh2-201ENSMUST00000045779 3486 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col28a1Q2UY11 Casc4-203ENSMUST00000089915 3475 ntTSL 2 BASIC14.18□□□□□ -0.14
Col28a1Q2UY11 Slc9a3-201ENSMUST00000036208 2490 ntAPPRIS P2 TSL 2 BASIC14.18□□□□□ -0.14
Col28a1Q2UY11 Fundc1-201ENSMUST00000026016 1983 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col28a1Q2UY11 Pafah1b1-202ENSMUST00000102520 5789 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col28a1Q2UY11 Tgif2-201ENSMUST00000073352 2690 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Col28a1Q2UY11 Trp53bp2-201ENSMUST00000117245 4361 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
Col28a1Q2UY11 Gm36445-203ENSMUST00000209951 1597 ntTSL 5 BASIC14.17□□□□□ -0.14
Col28a1Q2UY11 Mfsd1-201ENSMUST00000029344 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col28a1Q2UY11 Ccp110-202ENSMUST00000106557 5073 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col28a1Q2UY11 Plod2-201ENSMUST00000070522 3649 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col28a1Q2UY11 Pcsk4-201ENSMUST00000020340 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col28a1Q2UY11 Alpl-201ENSMUST00000030551 2522 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col28a1Q2UY11 Hsph1-211ENSMUST00000202361 3802 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col28a1Q2UY11 Commd7-201ENSMUST00000071852 3210 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col28a1Q2UY11 Vwa2-201ENSMUST00000026068 4049 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col28a1Q2UY11 Npnt-204ENSMUST00000117164 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col28a1Q2UY11 9330182L06Rik-202ENSMUST00000115348 3403 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col28a1Q2UY11 Ppp1r15a-202ENSMUST00000167273 2809 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
Col28a1Q2UY11 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Col28a1Q2UY11 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col28a1Q2UY11 Ptprs-202ENSMUST00000086828 5608 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Col28a1Q2UY11 Cchcr1-202ENSMUST00000164242 2656 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col28a1Q2UY11 Adamts15-201ENSMUST00000065112 5928 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col28a1Q2UY11 Rrnad1-206ENSMUST00000160074 1620 ntTSL 5 BASIC14.17□□□□□ -0.14
Col28a1Q2UY11 Usp33-201ENSMUST00000026507 4153 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col28a1Q2UY11 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC14.17□□□□□ -0.14
Col28a1Q2UY11 Gm4459-201ENSMUST00000118750 468 ntBASIC14.17□□□□□ -0.14
Col28a1Q2UY11 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
Col28a1Q2UY11 1190007I07Rik-203ENSMUST00000183363 406 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col28a1Q2UY11 Ap2s1-204ENSMUST00000205607 372 ntTSL 3 BASIC14.17□□□□□ -0.14
Col28a1Q2UY11 AC164441.1-201ENSMUST00000221369 1004 ntTSL 5 BASIC14.17□□□□□ -0.14
Col28a1Q2UY11 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col28a1Q2UY11 Mzb1-201ENSMUST00000025211 905 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col28a1Q2UY11 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col28a1Q2UY11 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col28a1Q2UY11 Hcn3-201ENSMUST00000029686 4002 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col28a1Q2UY11 Rnf217-201ENSMUST00000081989 11013 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Col28a1Q2UY11 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col28a1Q2UY11 Loxl2-201ENSMUST00000022660 5316 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col28a1Q2UY11 Dmkn-203ENSMUST00000085688 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col28a1Q2UY11 Ephx3-202ENSMUST00000162117 1590 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col28a1Q2UY11 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Col28a1Q2UY11 Klc2-201ENSMUST00000025798 2940 ntTSL 5 BASIC14.17□□□□□ -0.14
Col28a1Q2UY11 Kcnj12-201ENSMUST00000041944 2459 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col28a1Q2UY11 Arhgef40-201ENSMUST00000093813 5621 ntAPPRIS P4 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col28a1Q2UY11 Fam189b-202ENSMUST00000117278 2593 ntTSL 5 BASIC14.17□□□□□ -0.14
Col28a1Q2UY11 Spg20-201ENSMUST00000044116 3770 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col28a1Q2UY11 Pramel1-201ENSMUST00000037419 2794 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col28a1Q2UY11 A230087F16Rik-202ENSMUST00000181561 1303 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Col28a1Q2UY11 Dnajb1-201ENSMUST00000005620 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col28a1Q2UY11 Ccnf-201ENSMUST00000115390 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col28a1Q2UY11 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col28a1Q2UY11 Acr-201ENSMUST00000023295 1504 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col28a1Q2UY11 Il1rn-204ENSMUST00000114487 2474 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Col28a1Q2UY11 Kirrel-202ENSMUST00000107618 7278 ntAPPRIS P2 TSL 5 BASIC14.16□□□□□ -0.14
Col28a1Q2UY11 Necap2-201ENSMUST00000030760 1906 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col28a1Q2UY11 Slc4a5-202ENSMUST00000113899 5039 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Col28a1Q2UY11 Poli-202ENSMUST00000121674 2778 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col28a1Q2UY11 Zufsp-205ENSMUST00000218880 2005 ntTSL 5 BASIC14.16□□□□□ -0.14
Col28a1Q2UY11 Cnn2-202ENSMUST00000105374 926 ntTSL 5 BASIC14.16□□□□□ -0.14
Col28a1Q2UY11 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC14.16□□□□□ -0.14
Col28a1Q2UY11 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC14.16□□□□□ -0.14
Col28a1Q2UY11 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Col28a1Q2UY11 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Col28a1Q2UY11 Pih1d1-206ENSMUST00000210139 1077 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col28a1Q2UY11 AC154222.1-201ENSMUST00000223882 475 ntBASIC14.16□□□□□ -0.14
Col28a1Q2UY11 Pecr-202ENSMUST00000097698 932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col28a1Q2UY11 Lmx1b-201ENSMUST00000041730 4790 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col28a1Q2UY11 Vamp2-201ENSMUST00000021273 2205 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col28a1Q2UY11 AC166491.1-201ENSMUST00000227053 2308 ntBASIC14.16□□□□□ -0.14
Col28a1Q2UY11 Ist1-201ENSMUST00000034164 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col28a1Q2UY11 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Col28a1Q2UY11 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col28a1Q2UY11 Cage1-202ENSMUST00000089840 3449 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Col28a1Q2UY11 Plcb3-201ENSMUST00000025912 4201 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col28a1Q2UY11 Ick-203ENSMUST00000117330 2698 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
Col28a1Q2UY11 Bbx-204ENSMUST00000114477 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col28a1Q2UY11 Mfrp-202ENSMUST00000161381 4254 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col28a1Q2UY11 Rasl12-202ENSMUST00000165682 1903 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Col28a1Q2UY11 1110008P14Rik-202ENSMUST00000146423 2618 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Col28a1Q2UY11 Cpeb3-208ENSMUST00000132580 3148 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col28a1Q2UY11 Adgrb2-206ENSMUST00000106018 4470 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Col28a1Q2UY11 Krt71-201ENSMUST00000023710 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col28a1Q2UY11 Bid-201ENSMUST00000004560 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col28a1Q2UY11 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col28a1Q2UY11 Col7a1-202ENSMUST00000112070 9250 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Col28a1Q2UY11 Gstz1-205ENSMUST00000222885 1571 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Col28a1Q2UY11 Krt16-201ENSMUST00000007280 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col28a1Q2UY11 Aig1-202ENSMUST00000105534 617 ntTSL 5 BASIC14.15□□□□□ -0.14
Col28a1Q2UY11 Nt5c-202ENSMUST00000106530 836 ntTSL 3 BASIC14.15□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 32.7 ms