Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Mto1-201ENSMUST00000034896 2366 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Rfx3P48381 Arid3c-201ENSMUST00000084698 1417 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
Rfx3P48381 Slc22a18-202ENSMUST00000105917 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Rfx3P48381 Terf1-201ENSMUST00000027057 1581 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Rfx3P48381 Nfatc4-204ENSMUST00000226357 2680 ntAPPRIS ALT2 BASIC13.18□□□□□ -0.3
Rfx3P48381 Nphp4-202ENSMUST00000081393 5027 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Rfx3P48381 Ncln-202ENSMUST00000118498 2841 ntAPPRIS ALT1 TSL 5 BASIC13.18□□□□□ -0.3
Rfx3P48381 Nrap-201ENSMUST00000040711 5334 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Rfx3P48381 Nptn-201ENSMUST00000085651 2024 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Rfx3P48381 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Rfx3P48381 Dnajb5-204ENSMUST00000107973 2300 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Rfx3P48381 Lancl1-203ENSMUST00000119559 1385 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Rfx3P48381 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Rfx3P48381 Tnfsf13-202ENSMUST00000108648 1503 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Rfx3P48381 Hoxc4-201ENSMUST00000100164 1983 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Rfx3P48381 4921514A10Rik-201ENSMUST00000181450 2114 ntTSL 5 BASIC13.18□□□□□ -0.3
Rfx3P48381 Setd1b-206ENSMUST00000174836 7515 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Rfx3P48381 Wwox-202ENSMUST00000109107 2383 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Rfx3P48381 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
Rfx3P48381 Slc7a15-204ENSMUST00000165657 1467 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Rfx3P48381 Slc7a15-202ENSMUST00000095863 1467 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Rfx3P48381 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Rfx3P48381 Uhrf1bp1l-201ENSMUST00000020112 6448 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Rfx3P48381 Ubc-202ENSMUST00000136312 2618 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Rfx3P48381 Pdcd6ip-201ENSMUST00000035086 5951 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
Rfx3P48381 Cdk6-201ENSMUST00000042410 2470 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Rfx3P48381 Arid5a-208ENSMUST00000137906 5504 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Rfx3P48381 Gins2-201ENSMUST00000034278 3900 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Rfx3P48381 Eaf1-201ENSMUST00000022446 4918 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Rfx3P48381 Rrp1b-201ENSMUST00000081339 4874 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Rfx3P48381 Gm37691-201ENSMUST00000192147 2573 ntBASIC13.17□□□□□ -0.3
Rfx3P48381 0610025J13Rik-201ENSMUST00000131324 652 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Rfx3P48381 Enkd1-201ENSMUST00000013299 1275 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Rfx3P48381 Ctcflos-201ENSMUST00000142165 469 ntTSL 3 BASIC13.17□□□□□ -0.3
Rfx3P48381 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Rfx3P48381 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC13.17□□□□□ -0.3
Rfx3P48381 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC13.17□□□□□ -0.3
Rfx3P48381 Pih1d1-206ENSMUST00000210139 1077 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Rfx3P48381 Bpifa3-201ENSMUST00000028984 1107 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
Rfx3P48381 Apoa1-201ENSMUST00000034588 1035 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Rfx3P48381 Crb3-201ENSMUST00000071826 1194 ntAPPRIS P3 TSL 3 BASIC13.17□□□□□ -0.3
Rfx3P48381 Ythdf2-201ENSMUST00000085181 955 ntTSL 2 BASIC13.17□□□□□ -0.3
Rfx3P48381 Apol7d-201ENSMUST00000097699 826 ntTSL 2 BASIC13.17□□□□□ -0.3
Rfx3P48381 D930028M14Rik-201ENSMUST00000098678 1003 ntTSL 2 BASIC13.17□□□□□ -0.3
Rfx3P48381 Opa1-206ENSMUST00000160597 6230 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Rfx3P48381 Acat2-203ENSMUST00000159697 1800 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Rfx3P48381 A930004D18Rik-201ENSMUST00000066163 3217 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Rfx3P48381 Ptprn2-201ENSMUST00000070733 3201 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Rfx3P48381 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Rfx3P48381 Ints1-201ENSMUST00000072607 7102 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Rfx3P48381 Smpd3-202ENSMUST00000212896 2626 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Rfx3P48381 Olfr56-201ENSMUST00000056759 1925 ntTSL 5 BASIC13.17□□□□□ -0.3
Rfx3P48381 Gm20708-201ENSMUST00000132298 1780 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
Rfx3P48381 Zfp784-201ENSMUST00000062428 2153 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Rfx3P48381 Alg3-201ENSMUST00000045918 1451 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Rfx3P48381 Tsc22d1-202ENSMUST00000048371 4818 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Rfx3P48381 Arhgef40-201ENSMUST00000093813 5621 ntAPPRIS P4 TSL 1 (best) BASIC13.16□□□□□ -0.3
Rfx3P48381 Galnt17-201ENSMUST00000086023 8040 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Rfx3P48381 Sf3a1-201ENSMUST00000002198 4920 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Rfx3P48381 Acin1-224ENSMUST00000167015 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Rfx3P48381 Gm5366-201ENSMUST00000215494 1338 ntBASIC13.16□□□□□ -0.3
Rfx3P48381 Rnf135-201ENSMUST00000017839 1984 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Rfx3P48381 Lin54-201ENSMUST00000046154 4451 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Rfx3P48381 Gm36445-203ENSMUST00000209951 1597 ntTSL 5 BASIC13.16□□□□□ -0.3
Rfx3P48381 Epha1-201ENSMUST00000073387 3273 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Rfx3P48381 AC166574.6-201ENSMUST00000227889 1806 ntBASIC13.16□□□□□ -0.3
Rfx3P48381 1700022A21Rik-202ENSMUST00000182910 1448 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Rfx3P48381 Lypd1-202ENSMUST00000159417 6464 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Rfx3P48381 Amhr2-201ENSMUST00000023809 1938 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Rfx3P48381 Zglp1-201ENSMUST00000115494 1010 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Rfx3P48381 Gm18733-201ENSMUST00000173950 856 ntBASIC13.16□□□□□ -0.3
Rfx3P48381 Mir5131-201ENSMUST00000175426 93 ntBASIC13.16□□□□□ -0.3
Rfx3P48381 Gm42670-201ENSMUST00000201816 1292 ntBASIC13.16□□□□□ -0.3
Rfx3P48381 Gm43935-201ENSMUST00000203569 1050 ntBASIC13.16□□□□□ -0.3
Rfx3P48381 4931406C07Rik-209ENSMUST00000217042 691 ntTSL 3 BASIC13.16□□□□□ -0.3
Rfx3P48381 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
Rfx3P48381 Tvp23b-201ENSMUST00000014321 1784 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Rfx3P48381 Gm3739-201ENSMUST00000165744 2011 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Rfx3P48381 Efnb1-201ENSMUST00000052839 3258 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Rfx3P48381 Zpbp2-204ENSMUST00000107511 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Rfx3P48381 Cpeb3-208ENSMUST00000132580 3148 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Rfx3P48381 Chtf8-202ENSMUST00000175940 2890 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Rfx3P48381 Fbxo3-201ENSMUST00000028603 4740 ntAPPRIS P4 TSL 1 (best) BASIC13.16□□□□□ -0.3
Rfx3P48381 Pctp-201ENSMUST00000020864 2723 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Rfx3P48381 Dcaf17-202ENSMUST00000102701 1703 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Rfx3P48381 4933433G15Rik-201ENSMUST00000180533 1481 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Rfx3P48381 Ints14-201ENSMUST00000037504 2837 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Rfx3P48381 Slc25a19-201ENSMUST00000021089 2307 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Rfx3P48381 Osbpl11-201ENSMUST00000039733 4520 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Rfx3P48381 Acap2-201ENSMUST00000058033 6493 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Rfx3P48381 Ubtf-209ENSMUST00000173870 2936 ntAPPRIS P3 TSL 5 BASIC13.16□□□□□ -0.3
Rfx3P48381 Myo1c-204ENSMUST00000108431 4718 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Rfx3P48381 Ephx3-202ENSMUST00000162117 1590 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Rfx3P48381 Ece2-204ENSMUST00000133344 3042 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Rfx3P48381 Dmpk-201ENSMUST00000032568 2761 ntAPPRIS P3 TSL 5 BASIC13.15□□□□□ -0.3
Rfx3P48381 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Rfx3P48381 Sfxn4-203ENSMUST00000135808 1309 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Rfx3P48381 Gm21009-201ENSMUST00000197169 1669 ntBASIC13.15□□□□□ -0.3
Rfx3P48381 AC130669.1-201ENSMUST00000228537 1672 ntBASIC13.15□□□□□ -0.3
Rfx3P48381 Taf2-201ENSMUST00000041733 5031 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 28.4 ms