Protein–RNA interactions for Protein: O35627

Nr1i3, Nuclear receptor subfamily 1 group I member 3, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1i3O35627 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Nr1i3O35627 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
Nr1i3O35627 Gm44107-201ENSMUST00000203242 573 ntTSL 2 BASIC15.66■□□□□ 0.1
Nr1i3O35627 AC154222.1-201ENSMUST00000223882 475 ntBASIC15.66■□□□□ 0.1
Nr1i3O35627 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC15.66■□□□□ 0.1
Nr1i3O35627 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Nr1i3O35627 St8sia6-201ENSMUST00000003509 7618 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Nr1i3O35627 Cfap45-201ENSMUST00000085894 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Nr1i3O35627 Kpna6-201ENSMUST00000003828 2195 ntAPPRIS ALT1 TSL 5 BASIC15.66■□□□□ 0.1
Nr1i3O35627 Meioc-201ENSMUST00000100378 4573 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Nr1i3O35627 Phb2-201ENSMUST00000004375 1318 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Nr1i3O35627 Leng9-201ENSMUST00000058358 2460 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
Nr1i3O35627 Pomgnt1-202ENSMUST00000106496 2613 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Nr1i3O35627 Gm43399-201ENSMUST00000202546 2374 ntBASIC15.65■□□□□ 0.1
Nr1i3O35627 Gm28496-202ENSMUST00000137742 2752 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Nr1i3O35627 Fbxl4-201ENSMUST00000039234 2546 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Nr1i3O35627 Pdzd11-201ENSMUST00000015812 1626 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Nr1i3O35627 Phykpl-201ENSMUST00000020625 1609 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Nr1i3O35627 Midn-201ENSMUST00000042057 3727 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
Nr1i3O35627 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
Nr1i3O35627 Gstm7-201ENSMUST00000004137 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Nr1i3O35627 Ap1g1-202ENSMUST00000093157 6899 ntAPPRIS P3 TSL 5 BASIC15.65■□□□□ 0.1
Nr1i3O35627 Taz-202ENSMUST00000114180 1786 ntAPPRIS ALT1 TSL 5 BASIC15.65■□□□□ 0.1
Nr1i3O35627 AC122901.1-201ENSMUST00000214203 1790 ntBASIC15.65■□□□□ 0.1
Nr1i3O35627 Scamp1-201ENSMUST00000022197 4259 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Nr1i3O35627 Ptger1-201ENSMUST00000019608 4694 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Nr1i3O35627 Cand2-201ENSMUST00000075995 5474 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Nr1i3O35627 Gnl3-201ENSMUST00000037739 1947 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Nr1i3O35627 Cpeb3-212ENSMUST00000154376 5671 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
Nr1i3O35627 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
Nr1i3O35627 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC15.65■□□□□ 0.1
Nr1i3O35627 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC15.65■□□□□ 0.1
Nr1i3O35627 AC138767.1-201ENSMUST00000222661 415 ntBASIC15.65■□□□□ 0.1
Nr1i3O35627 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Nr1i3O35627 Gm13410-201ENSMUST00000117058 1415 ntBASIC15.65■□□□□ 0.1
Nr1i3O35627 Dusp23-201ENSMUST00000027826 1410 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Nr1i3O35627 Cpne1-203ENSMUST00000109608 3492 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Nr1i3O35627 Casc4-204ENSMUST00000110586 4032 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Nr1i3O35627 Gm42471-201ENSMUST00000201457 1865 ntBASIC15.65■□□□□ 0.1
Nr1i3O35627 Trim63-201ENSMUST00000030638 1855 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
Nr1i3O35627 Baz1b-201ENSMUST00000002825 6492 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Nr1i3O35627 Ppp2r5b-201ENSMUST00000025695 2742 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Nr1i3O35627 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Nr1i3O35627 Timp2-201ENSMUST00000017610 3709 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Nr1i3O35627 Jun-201ENSMUST00000107094 3189 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
Nr1i3O35627 Brpf1-209ENSMUST00000204198 4307 ntTSL 5 BASIC15.64■□□□□ 0.1
Nr1i3O35627 AC166574.6-201ENSMUST00000227889 1806 ntBASIC15.64■□□□□ 0.09
Nr1i3O35627 Fbxo21-201ENSMUST00000035579 3883 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Nr1i3O35627 Gm43951-201ENSMUST00000204457 2889 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
Nr1i3O35627 Cpt2-203ENSMUST00000106720 1015 ntTSL 2 BASIC15.64■□□□□ 0.09
Nr1i3O35627 Gm5479-201ENSMUST00000160578 435 ntBASIC15.64■□□□□ 0.09
Nr1i3O35627 Mbl1-202ENSMUST00000225792 1563 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
Nr1i3O35627 Spo11-201ENSMUST00000050442 1709 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
Nr1i3O35627 Hist2h3b-201ENSMUST00000098843 488 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
Nr1i3O35627 Cenpl-203ENSMUST00000111620 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Nr1i3O35627 Trim32-201ENSMUST00000050850 3194 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Nr1i3O35627 Islr2-210ENSMUST00000215950 4109 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
Nr1i3O35627 Adgrl1-210ENSMUST00000152978 5734 ntTSL 5 BASIC15.64■□□□□ 0.09
Nr1i3O35627 Nck1-202ENSMUST00000116522 4476 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Nr1i3O35627 Col8a2-201ENSMUST00000070132 4332 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Nr1i3O35627 R3hcc1-202ENSMUST00000121142 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Nr1i3O35627 Acbd5-215ENSMUST00000228050 4804 ntAPPRIS ALT2 BASIC15.64■□□□□ 0.09
Nr1i3O35627 Miip-201ENSMUST00000030886 1813 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Nr1i3O35627 Dpp7-201ENSMUST00000028332 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Nr1i3O35627 Sema4c-201ENSMUST00000114991 3773 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Nr1i3O35627 Fam163b-201ENSMUST00000151224 2959 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Nr1i3O35627 Rbm26-201ENSMUST00000022715 3633 ntTSL 5 BASIC15.63■□□□□ 0.09
Nr1i3O35627 Mettl27-203ENSMUST00000111218 1387 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Nr1i3O35627 Nt5e-201ENSMUST00000034992 3995 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Nr1i3O35627 Dnmt3b-202ENSMUST00000072997 4208 ntAPPRIS P4 TSL 1 (best) BASIC15.63■□□□□ 0.09
Nr1i3O35627 Rusc2-207ENSMUST00000131668 5093 ntTSL 5 BASIC15.63■□□□□ 0.09
Nr1i3O35627 Marveld3-202ENSMUST00000051430 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Nr1i3O35627 Kcnj9-202ENSMUST00000194204 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Nr1i3O35627 Pex2-202ENSMUST00000071280 1777 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Nr1i3O35627 Gk-201ENSMUST00000026039 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Nr1i3O35627 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Nr1i3O35627 Gm14140-201ENSMUST00000119999 995 ntBASIC15.63■□□□□ 0.09
Nr1i3O35627 Slc7a10-203ENSMUST00000135452 629 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Nr1i3O35627 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
Nr1i3O35627 Gm26661-201ENSMUST00000181025 471 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
Nr1i3O35627 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
Nr1i3O35627 Tpd52l1-202ENSMUST00000213528 969 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Nr1i3O35627 Fam26f-201ENSMUST00000062784 1094 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Nr1i3O35627 Acot4-201ENSMUST00000021652 6203 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Nr1i3O35627 Apol8-202ENSMUST00000089450 2498 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
Nr1i3O35627 Kcnip1-202ENSMUST00000101368 2322 ntTSL 2 BASIC15.63■□□□□ 0.09
Nr1i3O35627 Wdr90-201ENSMUST00000079461 5991 ntAPPRIS P2 TSL 5 BASIC15.63■□□□□ 0.09
Nr1i3O35627 Rundc1-201ENSMUST00000040561 3223 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Nr1i3O35627 Ids-201ENSMUST00000101509 4972 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Nr1i3O35627 B4galnt1-201ENSMUST00000006914 2395 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Nr1i3O35627 Ptbp3-205ENSMUST00000148331 2016 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
Nr1i3O35627 Exosc5-206ENSMUST00000206561 1680 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Nr1i3O35627 Ss18l1-201ENSMUST00000041126 4343 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Nr1i3O35627 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Nr1i3O35627 Rasal3-204ENSMUST00000135618 3293 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
Nr1i3O35627 Clcc1-201ENSMUST00000029483 2224 ntAPPRIS P3 TSL 5 BASIC15.63■□□□□ 0.09
Nr1i3O35627 Gnpda2-201ENSMUST00000031117 1894 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
Nr1i3O35627 Hnrnpa3-202ENSMUST00000111961 1734 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Nr1i3O35627 Kif11-201ENSMUST00000012587 4819 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Nr1i3O35627 Tnfrsf11a-201ENSMUST00000027559 5027 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 135.7 ms