Protein–RNA interactions for Protein: Q9ESN2

Trim39, E3 ubiquitin-protein ligase TRIM39, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39Q9ESN2 Gtse1-201ENSMUST00000170629 2721 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trim39Q9ESN2 Prkcq-201ENSMUST00000028118 3583 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trim39Q9ESN2 Eomes-201ENSMUST00000035020 3560 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trim39Q9ESN2 Gm26547-201ENSMUST00000181186 1508 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Trim39Q9ESN2 Car7-201ENSMUST00000056051 1538 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trim39Q9ESN2 Dmkn-202ENSMUST00000054427 2034 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Trim39Q9ESN2 Pja1-205ENSMUST00000167246 2666 ntAPPRIS P4 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trim39Q9ESN2 Hdhd2-203ENSMUST00000097522 2318 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trim39Q9ESN2 Sned1-201ENSMUST00000062202 9147 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trim39Q9ESN2 Cacna1g-203ENSMUST00000103166 8104 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Trim39Q9ESN2 Marveld3-201ENSMUST00000001722 1330 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Trim39Q9ESN2 Pik3cd-204ENSMUST00000105690 4921 ntAPPRIS P4 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trim39Q9ESN2 Opa1-206ENSMUST00000160597 6230 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trim39Q9ESN2 Ino80-202ENSMUST00000110808 3928 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Trim39Q9ESN2 Tmem2-202ENSMUST00000096194 6667 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Trim39Q9ESN2 Secisbp2l-201ENSMUST00000053699 6797 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trim39Q9ESN2 Dek-201ENSMUST00000021807 2556 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trim39Q9ESN2 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trim39Q9ESN2 Gm11453-201ENSMUST00000117318 1007 ntBASIC13.69□□□□□ -0.22
Trim39Q9ESN2 Gm11536-201ENSMUST00000130733 535 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Trim39Q9ESN2 Gm18489-201ENSMUST00000172565 551 ntBASIC13.69□□□□□ -0.22
Trim39Q9ESN2 4930477E14Rik-201ENSMUST00000181412 621 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Trim39Q9ESN2 Gm28411-202ENSMUST00000191318 464 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Trim39Q9ESN2 Gm18195-201ENSMUST00000207604 706 ntBASIC13.69□□□□□ -0.22
Trim39Q9ESN2 Ly6k-201ENSMUST00000060301 791 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trim39Q9ESN2 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
Trim39Q9ESN2 Dcakd-201ENSMUST00000021313 1744 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trim39Q9ESN2 Hmx2-201ENSMUST00000051997 3102 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trim39Q9ESN2 Abi3-201ENSMUST00000059026 4006 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trim39Q9ESN2 Eif1ad-201ENSMUST00000025759 2469 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trim39Q9ESN2 Dnmt3b-210ENSMUST00000109774 4320 ntAPPRIS P4 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trim39Q9ESN2 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
Trim39Q9ESN2 Ror2-201ENSMUST00000021918 3985 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trim39Q9ESN2 Ythdf2-203ENSMUST00000152796 4129 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trim39Q9ESN2 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Trim39Q9ESN2 Cand1-201ENSMUST00000020315 7766 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trim39Q9ESN2 Fam198a-204ENSMUST00000215990 2149 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trim39Q9ESN2 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trim39Q9ESN2 Atp6v0d1-201ENSMUST00000013304 1629 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trim39Q9ESN2 AC157650.3-201ENSMUST00000225058 1476 ntBASIC13.68□□□□□ -0.22
Trim39Q9ESN2 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC13.68□□□□□ -0.22
Trim39Q9ESN2 Lysmd3-202ENSMUST00000224300 4250 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
Trim39Q9ESN2 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trim39Q9ESN2 Ndufs7-202ENSMUST00000105364 983 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Trim39Q9ESN2 Gm11455-201ENSMUST00000149285 733 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Trim39Q9ESN2 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trim39Q9ESN2 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC13.68□□□□□ -0.22
Trim39Q9ESN2 Gm10499-201ENSMUST00000174094 934 ntBASIC13.68□□□□□ -0.22
Trim39Q9ESN2 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
Trim39Q9ESN2 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC13.68□□□□□ -0.22
Trim39Q9ESN2 Gm26661-201ENSMUST00000181025 471 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
Trim39Q9ESN2 Gm5253-201ENSMUST00000187104 1025 ntBASIC13.68□□□□□ -0.22
Trim39Q9ESN2 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC13.68□□□□□ -0.22
Trim39Q9ESN2 Gm9682-201ENSMUST00000197505 556 ntBASIC13.68□□□□□ -0.22
Trim39Q9ESN2 Myl12b-201ENSMUST00000038446 1253 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trim39Q9ESN2 Gm7461-201ENSMUST00000058918 827 ntBASIC13.68□□□□□ -0.22
Trim39Q9ESN2 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trim39Q9ESN2 Prnd-202ENSMUST00000110170 1969 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trim39Q9ESN2 Ripk4-201ENSMUST00000019386 3541 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trim39Q9ESN2 Wwox-202ENSMUST00000109107 2383 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Trim39Q9ESN2 Pcdh7-203ENSMUST00000191837 8785 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trim39Q9ESN2 Smyd1-203ENSMUST00000114188 2064 ntTSL 5 BASIC13.68□□□□□ -0.22
Trim39Q9ESN2 Ikzf1-204ENSMUST00000076700 5163 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trim39Q9ESN2 Rbm47-201ENSMUST00000094756 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trim39Q9ESN2 Gckr-201ENSMUST00000072228 2014 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trim39Q9ESN2 E230029C05Rik-202ENSMUST00000207458 2445 ntTSL 5 BASIC13.68□□□□□ -0.22
Trim39Q9ESN2 Specc1-202ENSMUST00000092415 6797 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Trim39Q9ESN2 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Trim39Q9ESN2 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Trim39Q9ESN2 Gm5049-201ENSMUST00000195878 1590 ntBASIC13.67□□□□□ -0.22
Trim39Q9ESN2 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Trim39Q9ESN2 Col8a2-201ENSMUST00000070132 4332 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Trim39Q9ESN2 Orai2-201ENSMUST00000041048 3908 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Trim39Q9ESN2 Gnas-204ENSMUST00000087877 3947 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Trim39Q9ESN2 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Trim39Q9ESN2 Cacna1g-207ENSMUST00000107789 8383 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Trim39Q9ESN2 March8-213ENSMUST00000203193 4245 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Trim39Q9ESN2 Gm9918-201ENSMUST00000181801 2192 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Trim39Q9ESN2 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Trim39Q9ESN2 4930481B07Rik-201ENSMUST00000128160 1089 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Trim39Q9ESN2 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC13.67□□□□□ -0.22
Trim39Q9ESN2 Mir5131-201ENSMUST00000175426 93 ntBASIC13.67□□□□□ -0.22
Trim39Q9ESN2 Urah-204ENSMUST00000185612 716 ntAPPRIS P3 TSL 3 BASIC13.67□□□□□ -0.22
Trim39Q9ESN2 Gm42413-201ENSMUST00000196216 338 ntTSL 5 BASIC13.67□□□□□ -0.22
Trim39Q9ESN2 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Trim39Q9ESN2 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC13.67□□□□□ -0.22
Trim39Q9ESN2 AV026068-213ENSMUST00000223675 1171 ntBASIC13.67□□□□□ -0.22
Trim39Q9ESN2 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Trim39Q9ESN2 Klk14-201ENSMUST00000056329 1271 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Trim39Q9ESN2 Ube2f-201ENSMUST00000059743 1154 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Trim39Q9ESN2 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Trim39Q9ESN2 Mcrs1-202ENSMUST00000163506 1795 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Trim39Q9ESN2 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
Trim39Q9ESN2 Arpc1b-201ENSMUST00000085679 3105 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Trim39Q9ESN2 Rab9b-201ENSMUST00000058814 3980 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Trim39Q9ESN2 Hsph1-201ENSMUST00000074846 3240 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Trim39Q9ESN2 Abtb2-201ENSMUST00000076212 4558 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Trim39Q9ESN2 Kdm5c-203ENSMUST00000112588 6449 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Trim39Q9ESN2 Ccdc157-202ENSMUST00000101626 5153 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Trim39Q9ESN2 Hp1bp3-204ENSMUST00000105826 3348 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 43.6 ms