Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Mbp-203ENSMUST00000075372 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Cdh11P55288 Lman2-201ENSMUST00000021940 4315 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Cdh11P55288 Depdc1b-201ENSMUST00000051594 2563 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Cdh11P55288 Aggf1-201ENSMUST00000022189 3249 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Cdh11P55288 Creg2-201ENSMUST00000053355 6091 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Cdh11P55288 Phka1-201ENSMUST00000043596 5938 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Cdh11P55288 Sh2b1-205ENSMUST00000205733 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Cdh11P55288 Ppp1r1b-206ENSMUST00000150762 1801 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Cdh11P55288 Zfp553-202ENSMUST00000106312 3342 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Cdh11P55288 Zswim8-204ENSMUST00000223840 5674 ntAPPRIS ALT2 BASIC13.34□□□□□ -0.27
Cdh11P55288 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
Cdh11P55288 Nop56-202ENSMUST00000103198 1877 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Cdh11P55288 Ly9-201ENSMUST00000004827 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.27
Cdh11P55288 Gm42632-201ENSMUST00000201707 2411 ntBASIC13.33□□□□□ -0.27
Cdh11P55288 Nt5c2-203ENSMUST00000172239 3148 ntTSL 5 BASIC13.33□□□□□ -0.27
Cdh11P55288 Acin1-201ENSMUST00000022793 4735 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cdh11P55288 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cdh11P55288 Hcn3-201ENSMUST00000029686 4002 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cdh11P55288 Xpot-201ENSMUST00000039810 5992 ntTSL 5 BASIC13.33□□□□□ -0.28
Cdh11P55288 Osbpl8-202ENSMUST00000105275 7204 ntAPPRIS ALT1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cdh11P55288 Gm8909-203ENSMUST00000173353 1428 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
Cdh11P55288 Vapb-201ENSMUST00000067530 7029 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cdh11P55288 Dgke-201ENSMUST00000000285 5208 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cdh11P55288 Zdhhc7-201ENSMUST00000034280 3069 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cdh11P55288 Usp33-201ENSMUST00000026507 4153 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cdh11P55288 Ralgapb-203ENSMUST00000109486 8383 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cdh11P55288 Gm14494-201ENSMUST00000118786 435 ntBASIC13.33□□□□□ -0.28
Cdh11P55288 Gm15358-201ENSMUST00000119249 520 ntBASIC13.33□□□□□ -0.28
Cdh11P55288 Psmb1-201ENSMUST00000014913 1036 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cdh11P55288 Gm20680-201ENSMUST00000176881 789 ntTSL 5 BASIC13.33□□□□□ -0.28
Cdh11P55288 BC022687-202ENSMUST00000177808 1207 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cdh11P55288 Gm45683-201ENSMUST00000210825 1247 ntBASIC13.33□□□□□ -0.28
Cdh11P55288 AC090659.1-201ENSMUST00000224334 768 ntBASIC13.33□□□□□ -0.28
Cdh11P55288 1700021F07Rik-201ENSMUST00000029023 646 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cdh11P55288 6030498E09Rik-201ENSMUST00000050744 1291 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cdh11P55288 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cdh11P55288 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cdh11P55288 Slbp-202ENSMUST00000075670 1027 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cdh11P55288 Sf3a1-201ENSMUST00000002198 4920 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cdh11P55288 Smarce1-201ENSMUST00000103133 2919 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cdh11P55288 Samd14-201ENSMUST00000055947 3318 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cdh11P55288 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cdh11P55288 Zfp628-201ENSMUST00000116354 3523 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cdh11P55288 Emilin3-201ENSMUST00000057169 3547 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cdh11P55288 Sema3b-201ENSMUST00000073448 2987 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cdh11P55288 Kcnh4-201ENSMUST00000107361 3748 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
Cdh11P55288 Zkscan4-201ENSMUST00000062609 2400 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
Cdh11P55288 Phka1-204ENSMUST00000119229 6025 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
Cdh11P55288 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
Cdh11P55288 Plcb3-201ENSMUST00000025912 4201 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cdh11P55288 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC13.33□□□□□ -0.28
Cdh11P55288 Apaf1-201ENSMUST00000020157 6577 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cdh11P55288 Chtop-205ENSMUST00000107343 3118 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Cdh11P55288 Hipk3-202ENSMUST00000111124 4125 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Cdh11P55288 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Cdh11P55288 Krt16-201ENSMUST00000007280 1565 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cdh11P55288 Ptk2-202ENSMUST00000170939 3598 ntTSL 2 BASIC13.32□□□□□ -0.28
Cdh11P55288 Dkk1-201ENSMUST00000025803 2427 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cdh11P55288 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Cdh11P55288 Rflna-203ENSMUST00000197746 1649 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cdh11P55288 Ptp4a1-202ENSMUST00000076587 2851 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cdh11P55288 Gm43195-201ENSMUST00000200614 2332 ntBASIC13.32□□□□□ -0.28
Cdh11P55288 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cdh11P55288 Gm11185-201ENSMUST00000117732 1007 ntBASIC13.32□□□□□ -0.28
Cdh11P55288 Ndufa5-202ENSMUST00000118558 315 ntTSL 2 BASIC13.32□□□□□ -0.28
Cdh11P55288 Dbi-207ENSMUST00000151708 491 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Cdh11P55288 Nptn-211ENSMUST00000177064 582 ntTSL 5 BASIC13.32□□□□□ -0.28
Cdh11P55288 Ndufaf8-202ENSMUST00000185558 427 ntTSL 5 BASIC13.32□□□□□ -0.28
Cdh11P55288 Vsig2-206ENSMUST00000215957 851 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Cdh11P55288 Gm7787-201ENSMUST00000216858 688 ntBASIC13.32□□□□□ -0.28
Cdh11P55288 Crb3-201ENSMUST00000071826 1194 ntAPPRIS P3 TSL 3 BASIC13.32□□□□□ -0.28
Cdh11P55288 Armc9-205ENSMUST00000131412 2160 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cdh11P55288 Rcbtb1-202ENSMUST00000043227 3903 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cdh11P55288 4930402H24Rik-202ENSMUST00000110243 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cdh11P55288 Tet3-203ENSMUST00000186548 5944 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cdh11P55288 Gm11873-201ENSMUST00000117877 1304 ntBASIC13.32□□□□□ -0.28
Cdh11P55288 Kctd14-205ENSMUST00000206279 2203 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
Cdh11P55288 Tmem184c-201ENSMUST00000034030 2678 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cdh11P55288 Majin-202ENSMUST00000113528 1562 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cdh11P55288 Iqcd-201ENSMUST00000069259 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cdh11P55288 Kcnk6-201ENSMUST00000085818 4084 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cdh11P55288 Tsc22d4-203ENSMUST00000100540 2730 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Cdh11P55288 Ablim1-209ENSMUST00000111546 2267 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
Cdh11P55288 AC131586.3-201ENSMUST00000228355 1367 ntBASIC13.32□□□□□ -0.28
Cdh11P55288 Msantd3-202ENSMUST00000064807 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cdh11P55288 Ncbp2-201ENSMUST00000023460 2070 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cdh11P55288 Syp-201ENSMUST00000069520 2591 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cdh11P55288 Ube3a-201ENSMUST00000107537 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cdh11P55288 Plekha1-203ENSMUST00000120441 3777 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Cdh11P55288 St3gal3-202ENSMUST00000097912 2143 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Cdh11P55288 Abi3-201ENSMUST00000059026 4006 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cdh11P55288 Itfg1-201ENSMUST00000034140 3306 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cdh11P55288 2700080J24Rik-201ENSMUST00000205314 1662 ntBASIC13.31□□□□□ -0.28
Cdh11P55288 Gnl3-201ENSMUST00000037739 1947 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cdh11P55288 Pard3-222ENSMUST00000162536 5175 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Cdh11P55288 Celf4-206ENSMUST00000224553 1729 ntBASIC13.31□□□□□ -0.28
Cdh11P55288 Lrwd1-201ENSMUST00000006301 2473 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cdh11P55288 Iqce-202ENSMUST00000077890 2494 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cdh11P55288 Lrp11-203ENSMUST00000130590 3220 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cdh11P55288 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC13.31□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 28.1 ms