Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Rfx3P48381 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC13.21□□□□□ -0.29
Rfx3P48381 Mxra8os-201ENSMUST00000097740 687 ntBASIC13.21□□□□□ -0.29
Rfx3P48381 Heg1-201ENSMUST00000126532 6714 ntAPPRIS P5 TSL 5 BASIC13.21□□□□□ -0.29
Rfx3P48381 Hic1-201ENSMUST00000055619 3497 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Rfx3P48381 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC13.21□□□□□ -0.29
Rfx3P48381 Knop1-204ENSMUST00000106550 5524 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.3
Rfx3P48381 Lims2-201ENSMUST00000025254 1870 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Rfx3P48381 Oas1a-201ENSMUST00000080322 1885 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Rfx3P48381 Carlr-201ENSMUST00000181515 2574 ntBASIC13.21□□□□□ -0.3
Rfx3P48381 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC13.21□□□□□ -0.3
Rfx3P48381 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Rfx3P48381 Nek7-202ENSMUST00000186017 5258 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Rfx3P48381 Rnf11-201ENSMUST00000030284 4061 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Rfx3P48381 Nr2e3-201ENSMUST00000034831 2037 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Rfx3P48381 Tacc3-201ENSMUST00000074849 2669 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Rfx3P48381 Dnmt3b-202ENSMUST00000072997 4208 ntAPPRIS P4 TSL 1 (best) BASIC13.2□□□□□ -0.3
Rfx3P48381 Ghr-201ENSMUST00000069451 4175 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Rfx3P48381 Kdm5c-202ENSMUST00000112584 5900 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
Rfx3P48381 Cdt1-201ENSMUST00000006760 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Rfx3P48381 Iffo1-202ENSMUST00000119527 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Rfx3P48381 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Rfx3P48381 Sec22b-202ENSMUST00000122288 1177 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Rfx3P48381 Gm15598-201ENSMUST00000156965 763 ntTSL 5 BASIC13.2□□□□□ -0.3
Rfx3P48381 CT010506.4-201ENSMUST00000225457 351 ntBASIC13.2□□□□□ -0.3
Rfx3P48381 Slc7a7-209ENSMUST00000226753 2126 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
Rfx3P48381 Bex3-201ENSMUST00000053540 930 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
Rfx3P48381 Klhdc3-201ENSMUST00000071841 2123 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Rfx3P48381 Ndufs8-201ENSMUST00000075092 963 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Rfx3P48381 Cpeb3-210ENSMUST00000136286 5260 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
Rfx3P48381 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
Rfx3P48381 Gm20546-201ENSMUST00000173141 1889 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Rfx3P48381 Txndc11-203ENSMUST00000118679 3523 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Rfx3P48381 Evc-201ENSMUST00000031005 4325 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Rfx3P48381 Ap4b1-202ENSMUST00000076599 2692 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Rfx3P48381 Slc35c2-201ENSMUST00000017808 1843 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Rfx3P48381 1700012B07Rik-202ENSMUST00000106674 2035 ntAPPRIS P4 TSL 1 (best) BASIC13.2□□□□□ -0.3
Rfx3P48381 Scap-201ENSMUST00000098350 4227 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Rfx3P48381 Fstl4-201ENSMUST00000036796 4380 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Rfx3P48381 Ssbp2-201ENSMUST00000004094 3957 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Rfx3P48381 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Rfx3P48381 Nr2f1-205ENSMUST00000150498 2588 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Rfx3P48381 Prpf31-202ENSMUST00000108636 1798 ntTSL 5 BASIC13.2□□□□□ -0.3
Rfx3P48381 Aqp3-201ENSMUST00000055327 1765 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Rfx3P48381 Wdr45b-201ENSMUST00000026173 2321 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Rfx3P48381 Scara5-202ENSMUST00000069226 3262 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Rfx3P48381 Nmur1-203ENSMUST00000212541 1534 ntTSL 5 BASIC13.19□□□□□ -0.3
Rfx3P48381 Dsp-202ENSMUST00000127906 7761 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Rfx3P48381 Pld3-201ENSMUST00000117095 2282 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Rfx3P48381 Pld3-202ENSMUST00000117611 2297 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Rfx3P48381 Lrrc25-201ENSMUST00000052437 1313 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Rfx3P48381 Ddx4-202ENSMUST00000099166 3012 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Rfx3P48381 Tcf25-208ENSMUST00000212571 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Rfx3P48381 CT030684.3-201ENSMUST00000227308 2445 ntBASIC13.19□□□□□ -0.3
Rfx3P48381 Ap4b1-201ENSMUST00000047285 2799 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Rfx3P48381 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC13.19□□□□□ -0.3
Rfx3P48381 Ppp1r3g-201ENSMUST00000132661 2361 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Rfx3P48381 Wbp2-201ENSMUST00000074628 1826 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Rfx3P48381 Gm13036-201ENSMUST00000117799 748 ntBASIC13.19□□□□□ -0.3
Rfx3P48381 Fxyd5-208ENSMUST00000161805 1166 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
Rfx3P48381 Gm17114-201ENSMUST00000164716 511 ntTSL 3 BASIC13.19□□□□□ -0.3
Rfx3P48381 Csrp3-202ENSMUST00000167786 899 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Rfx3P48381 Dhrs7c-205ENSMUST00000168612 1108 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
Rfx3P48381 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC13.19□□□□□ -0.3
Rfx3P48381 4930556N13Rik-201ENSMUST00000173677 1034 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Rfx3P48381 Rac3-201ENSMUST00000018156 1076 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Rfx3P48381 1700021A07Rik-203ENSMUST00000188024 404 ntTSL 3 BASIC13.19□□□□□ -0.3
Rfx3P48381 Gm10419-203ENSMUST00000197854 653 ntTSL 5 BASIC13.19□□□□□ -0.3
Rfx3P48381 Gm43514-201ENSMUST00000198852 424 ntBASIC13.19□□□□□ -0.3
Rfx3P48381 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Rfx3P48381 Rpl19-ps10-201ENSMUST00000205555 330 ntBASIC13.19□□□□□ -0.3
Rfx3P48381 Gm18246-201ENSMUST00000221023 728 ntBASIC13.19□□□□□ -0.3
Rfx3P48381 6030498E09Rik-201ENSMUST00000050744 1291 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Rfx3P48381 Gm9918-201ENSMUST00000181801 2192 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Rfx3P48381 Grik5-201ENSMUST00000003468 3763 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Rfx3P48381 Grm7-201ENSMUST00000071076 3127 ntAPPRIS ALT1 TSL 5 BASIC13.19□□□□□ -0.3
Rfx3P48381 Pramel1-201ENSMUST00000037419 2794 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Rfx3P48381 Dsn1-201ENSMUST00000103129 2080 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Rfx3P48381 Sned1-201ENSMUST00000062202 9147 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Rfx3P48381 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Rfx3P48381 Lpar2-202ENSMUST00000164890 5800 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Rfx3P48381 Arl6ip1-201ENSMUST00000032888 2171 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Rfx3P48381 Psma3-202ENSMUST00000160027 2846 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Rfx3P48381 4930402H24Rik-202ENSMUST00000110243 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Rfx3P48381 Bmper-201ENSMUST00000071982 3791 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Rfx3P48381 Gtf2b-201ENSMUST00000029938 1455 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Rfx3P48381 Tsc22d4-203ENSMUST00000100540 2730 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Rfx3P48381 Ftl2-ps-201ENSMUST00000118517 552 ntBASIC13.18□□□□□ -0.3
Rfx3P48381 Znhit1-206ENSMUST00000156963 1208 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Rfx3P48381 Psma6-204ENSMUST00000163070 787 ntTSL 5 BASIC13.18□□□□□ -0.3
Rfx3P48381 Gm4899-201ENSMUST00000178708 719 ntBASIC13.18□□□□□ -0.3
Rfx3P48381 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC13.18□□□□□ -0.3
Rfx3P48381 Gm6443-201ENSMUST00000203599 874 ntBASIC13.18□□□□□ -0.3
Rfx3P48381 Gm38708-201ENSMUST00000203855 677 ntTSL 5 BASIC13.18□□□□□ -0.3
Rfx3P48381 Ly6d-201ENSMUST00000040404 744 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Rfx3P48381 Inhba-201ENSMUST00000042603 6390 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Rfx3P48381 Ube2f-201ENSMUST00000059743 1154 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Rfx3P48381 Gm15590-201ENSMUST00000078419 552 ntBASIC13.18□□□□□ -0.3
Rfx3P48381 Gm10313-201ENSMUST00000095320 1002 ntBASIC13.18□□□□□ -0.3
Rfx3P48381 Ndufab1-203ENSMUST00000123296 1416 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 18.3 ms