Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Prss51-202ENSMUST00000165710 953 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Col18a1P39061 Nsd1-205ENSMUST00000224693 852 ntBASIC19.01■□□□□ 0.63
Col18a1P39061 Hcfc1r1-201ENSMUST00000024697 946 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Col18a1P39061 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC19.01■□□□□ 0.63
Col18a1P39061 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Col18a1P39061 Dffa-202ENSMUST00000103216 1835 ntTSL 1 (best) BASIC19■□□□□ 0.63
Col18a1P39061 Prelid1-201ENSMUST00000021942 2644 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Col18a1P39061 Errfi1-201ENSMUST00000030811 3043 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Col18a1P39061 Igsf5-202ENSMUST00000081093 1554 ntTSL 1 (best) BASIC19■□□□□ 0.63
Col18a1P39061 Sh2d4a-201ENSMUST00000066594 2718 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Col18a1P39061 Syt3-201ENSMUST00000118831 2627 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
Col18a1P39061 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Col18a1P39061 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Col18a1P39061 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Col18a1P39061 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Col18a1P39061 Gm2694-202ENSMUST00000180806 1452 ntTSL 1 (best) BASIC19■□□□□ 0.63
Col18a1P39061 1810043G02Rik-202ENSMUST00000105398 899 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Col18a1P39061 Gm29608-201ENSMUST00000190444 463 ntBASIC19■□□□□ 0.63
Col18a1P39061 Sox2ot-205ENSMUST00000196795 754 ntTSL 3 BASIC19■□□□□ 0.63
Col18a1P39061 Trmt112-ps1-201ENSMUST00000202320 375 ntBASIC19■□□□□ 0.63
Col18a1P39061 Rps5-201ENSMUST00000004554 761 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Col18a1P39061 Cbx3-ps1-201ENSMUST00000091539 545 ntBASIC19■□□□□ 0.63
Col18a1P39061 Olfr554-201ENSMUST00000098221 954 ntAPPRIS P1 BASIC19■□□□□ 0.63
Col18a1P39061 9330020H09Rik-201ENSMUST00000163781 2147 ntTSL 2 BASIC19■□□□□ 0.63
Col18a1P39061 Htatsf1-201ENSMUST00000088652 2810 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Col18a1P39061 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Col18a1P39061 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC19■□□□□ 0.63
Col18a1P39061 Zfp639-205ENSMUST00000193287 2211 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Col18a1P39061 Scrn3-202ENSMUST00000112050 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Col18a1P39061 Tnip2-201ENSMUST00000030991 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Col18a1P39061 Psrc1-202ENSMUST00000102629 1687 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Col18a1P39061 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Col18a1P39061 Gm11638-201ENSMUST00000153672 1615 ntTSL 2 BASIC18.99■□□□□ 0.63
Col18a1P39061 Polr3c-202ENSMUST00000125183 923 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Col18a1P39061 Gm5637-201ENSMUST00000153890 1119 ntBASIC18.99■□□□□ 0.63
Col18a1P39061 Gm25261-201ENSMUST00000157416 134 ntBASIC18.99■□□□□ 0.63
Col18a1P39061 Gm27320-201ENSMUST00000184892 109 ntBASIC18.99■□□□□ 0.63
Col18a1P39061 Txndc17-201ENSMUST00000021158 981 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Col18a1P39061 1700018B08Rik-201ENSMUST00000034265 1084 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Col18a1P39061 Nkiras2-202ENSMUST00000051947 831 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Col18a1P39061 Gm9843-201ENSMUST00000052867 504 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
Col18a1P39061 Mtus2-202ENSMUST00000085554 1009 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Col18a1P39061 Napsa-201ENSMUST00000002274 1560 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Col18a1P39061 Acp5-203ENSMUST00000165735 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Col18a1P39061 Krt25-201ENSMUST00000038004 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Col18a1P39061 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Col18a1P39061 Lbp-201ENSMUST00000016168 2525 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Col18a1P39061 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Col18a1P39061 Slco3a1-201ENSMUST00000026897 4589 ntAPPRIS P4 TSL 1 (best) BASIC18.99■□□□□ 0.63
Col18a1P39061 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Col18a1P39061 Ccer1-201ENSMUST00000060703 1865 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
Col18a1P39061 Chchd3-201ENSMUST00000066379 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Col18a1P39061 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Col18a1P39061 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Col18a1P39061 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
Col18a1P39061 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
Col18a1P39061 Gm14966-202ENSMUST00000129675 649 ntTSL 2 BASIC18.98■□□□□ 0.63
Col18a1P39061 Gm37497-201ENSMUST00000195830 798 ntBASIC18.98■□□□□ 0.63
Col18a1P39061 4930432H08Rik-201ENSMUST00000198220 1284 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Col18a1P39061 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Col18a1P39061 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Col18a1P39061 Pomgnt1-202ENSMUST00000106496 2613 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Col18a1P39061 Ptbp3-205ENSMUST00000148331 2016 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
Col18a1P39061 Add2-203ENSMUST00000203279 1454 ntTSL 2 BASIC18.98■□□□□ 0.63
Col18a1P39061 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
Col18a1P39061 Fkbp4-201ENSMUST00000032508 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Col18a1P39061 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
Col18a1P39061 0610005C13Rik-207ENSMUST00000210866 2434 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Col18a1P39061 Drap1-209ENSMUST00000136579 734 ntTSL 2 BASIC18.98■□□□□ 0.63
Col18a1P39061 Egfl7-211ENSMUST00000152988 723 ntTSL 2 BASIC18.98■□□□□ 0.63
Col18a1P39061 Gm45339-201ENSMUST00000210823 877 ntTSL 5 BASIC18.98■□□□□ 0.63
Col18a1P39061 Gm6082-201ENSMUST00000215204 454 ntBASIC18.98■□□□□ 0.63
Col18a1P39061 Gm8227-201ENSMUST00000223306 571 ntBASIC18.98■□□□□ 0.63
Col18a1P39061 Riox2-203ENSMUST00000120674 1753 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Col18a1P39061 Gm14812-201ENSMUST00000156494 1794 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Col18a1P39061 Fancg-201ENSMUST00000030165 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Col18a1P39061 Wscd1-203ENSMUST00000108511 2866 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
Col18a1P39061 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Col18a1P39061 Rxra-202ENSMUST00000100251 1952 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Col18a1P39061 Rxra-203ENSMUST00000113934 1989 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Col18a1P39061 Gm9742-201ENSMUST00000165220 1553 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Col18a1P39061 Dlx5-202ENSMUST00000142635 1324 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Col18a1P39061 Plscr3-201ENSMUST00000019605 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Col18a1P39061 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Col18a1P39061 Itpripl1-203ENSMUST00000154021 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Col18a1P39061 Mrm3-201ENSMUST00000040577 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Col18a1P39061 Lrguk-202ENSMUST00000101564 967 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Col18a1P39061 Gm6023-201ENSMUST00000118217 606 ntBASIC18.97■□□□□ 0.63
Col18a1P39061 Pced1c-ps-201ENSMUST00000187740 751 ntBASIC18.97■□□□□ 0.63
Col18a1P39061 Gm7046-201ENSMUST00000221351 977 ntBASIC18.97■□□□□ 0.63
Col18a1P39061 Cdyl2-201ENSMUST00000109102 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Col18a1P39061 Ppcdc-209ENSMUST00000214624 1814 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Col18a1P39061 Slc31a2-201ENSMUST00000084530 1820 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
Col18a1P39061 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Col18a1P39061 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Col18a1P39061 4930438A08Rik-201ENSMUST00000108834 2093 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
Col18a1P39061 Tmem181b-ps-203ENSMUST00000188746 1626 ntTSL 5 BASIC18.97■□□□□ 0.63
Col18a1P39061 Large2-202ENSMUST00000090582 2291 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Col18a1P39061 Ppt2-201ENSMUST00000064953 1729 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Col18a1P39061 Slc43a3-201ENSMUST00000090726 2583 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Retrieved 100 of 76,532 protein–RNA pairs in 28.6 ms