Protein–RNA interactions for Protein: P31313

Hoxc11, Homeobox protein Hox-C11, mousemouse

Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxc11P31313 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC14.17□□□□□ -0.14
Hoxc11P31313 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Hoxc11P31313 2310011J03Rik-201ENSMUST00000020341 1649 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Hoxc11P31313 Chac1-201ENSMUST00000028780 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Hoxc11P31313 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Hoxc11P31313 Zfp74-203ENSMUST00000108211 1278 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Hoxc11P31313 Abhd11os-201ENSMUST00000136022 604 ntTSL 2 BASIC14.17□□□□□ -0.14
Hoxc11P31313 Haghl-207ENSMUST00000140738 1194 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Hoxc11P31313 9530003J23Rik-202ENSMUST00000159193 1033 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Hoxc11P31313 Bricd5-202ENSMUST00000164508 701 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Hoxc11P31313 4930448I06Rik-201ENSMUST00000194002 546 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Hoxc11P31313 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Hoxc11P31313 Vmn2r-ps89-201ENSMUST00000209195 1010 ntBASIC14.17□□□□□ -0.14
Hoxc11P31313 Lce1g-201ENSMUST00000029527 925 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Hoxc11P31313 Mrpl4-201ENSMUST00000003386 1288 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Hoxc11P31313 Atp2b3-203ENSMUST00000114479 4637 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Hoxc11P31313 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Hoxc11P31313 Shmt1-201ENSMUST00000018744 2858 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Hoxc11P31313 Mdp1-201ENSMUST00000002400 1733 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Hoxc11P31313 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC14.17□□□□□ -0.14
Hoxc11P31313 Gm15512-201ENSMUST00000137359 2257 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Hoxc11P31313 BC037032-201ENSMUST00000140003 3974 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Hoxc11P31313 Sftpb-204ENSMUST00000183018 1490 ntAPPRIS P2 TSL 5 BASIC14.17□□□□□ -0.14
Hoxc11P31313 Myog-201ENSMUST00000027730 1495 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Hoxc11P31313 Srcin1-202ENSMUST00000107593 3733 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Hoxc11P31313 Golim4-201ENSMUST00000038563 5546 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Hoxc11P31313 Adgrl1-201ENSMUST00000045393 5643 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Hoxc11P31313 Kif9-204ENSMUST00000198043 2233 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Hoxc11P31313 Padi4-201ENSMUST00000026381 2316 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Hoxc11P31313 Dlgap1-201ENSMUST00000060072 5420 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Hoxc11P31313 Rbm34-201ENSMUST00000045994 3424 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Hoxc11P31313 Thap6-204ENSMUST00000193925 1337 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Hoxc11P31313 AC154767.3-201ENSMUST00000225150 1342 ntBASIC14.16□□□□□ -0.14
Hoxc11P31313 Adrb3-203ENSMUST00000121838 1864 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Hoxc11P31313 Acbd5-203ENSMUST00000114526 3725 ntAPPRIS P4 TSL 1 (best) BASIC14.16□□□□□ -0.14
Hoxc11P31313 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Hoxc11P31313 Fam109b-201ENSMUST00000050349 2745 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Hoxc11P31313 Mterf4-202ENSMUST00000112942 1525 ntTSL 2 BASIC14.16□□□□□ -0.14
Hoxc11P31313 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Hoxc11P31313 Vps26b-201ENSMUST00000034470 3575 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Hoxc11P31313 Stt3b-201ENSMUST00000035010 4221 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Hoxc11P31313 Efcab8-203ENSMUST00000175856 1703 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
Hoxc11P31313 Spock1-205ENSMUST00000187852 3113 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Hoxc11P31313 Grm4-201ENSMUST00000118161 4537 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Hoxc11P31313 Rad18-201ENSMUST00000068487 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Hoxc11P31313 Gm12134-201ENSMUST00000122109 520 ntBASIC14.16□□□□□ -0.14
Hoxc11P31313 Arid2-202ENSMUST00000134985 809 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Hoxc11P31313 Mvk-206ENSMUST00000137167 1049 ntTSL 2 BASIC14.16□□□□□ -0.14
Hoxc11P31313 1700021F05Rik-202ENSMUST00000147196 860 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Hoxc11P31313 2310061I04Rik-204ENSMUST00000148721 1293 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Hoxc11P31313 Gm27164-201ENSMUST00000184359 723 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Hoxc11P31313 4930573H18Rik-201ENSMUST00000197696 906 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Hoxc11P31313 Ndufs6-203ENSMUST00000222930 512 ntTSL 3 BASIC14.16□□□□□ -0.14
Hoxc11P31313 AC126408.1-201ENSMUST00000225184 523 ntBASIC14.16□□□□□ -0.14
Hoxc11P31313 Rab33a-201ENSMUST00000033430 1158 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Hoxc11P31313 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Hoxc11P31313 Cyhr1-201ENSMUST00000066677 1163 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Hoxc11P31313 Gm11937-201ENSMUST00000076478 396 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Hoxc11P31313 Fbxl5-207ENSMUST00000124610 2306 ntTSL 5 BASIC14.16□□□□□ -0.14
Hoxc11P31313 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Hoxc11P31313 Glyr1-202ENSMUST00000115844 3348 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Hoxc11P31313 Glyr1-201ENSMUST00000023189 3330 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Hoxc11P31313 Cdx2-201ENSMUST00000031650 2261 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Hoxc11P31313 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Hoxc11P31313 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Hoxc11P31313 Msx3-201ENSMUST00000055353 2356 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Hoxc11P31313 Fam84b-201ENSMUST00000100635 5565 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Hoxc11P31313 Vsig10-202ENSMUST00000111967 4236 ntAPPRIS P2 TSL 5 BASIC14.16□□□□□ -0.14
Hoxc11P31313 Gm42934-201ENSMUST00000196920 1345 ntBASIC14.15□□□□□ -0.14
Hoxc11P31313 4930429H19Rik-201ENSMUST00000205260 1818 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Hoxc11P31313 Efs-202ENSMUST00000227037 2540 ntBASIC14.15□□□□□ -0.14
Hoxc11P31313 Rcor1-202ENSMUST00000116388 2720 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Hoxc11P31313 4732463B04Rik-201ENSMUST00000180751 2932 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Hoxc11P31313 Ints3-202ENSMUST00000071488 4038 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Hoxc11P31313 Mcmbp-201ENSMUST00000057557 4237 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Hoxc11P31313 Shank1-202ENSMUST00000107935 6649 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Hoxc11P31313 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
Hoxc11P31313 Pald1-201ENSMUST00000020289 4282 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Hoxc11P31313 Mpped1-203ENSMUST00000109470 3281 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Hoxc11P31313 Chtf8-202ENSMUST00000175940 2890 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Hoxc11P31313 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Hoxc11P31313 Gm15693-201ENSMUST00000120470 637 ntBASIC14.15□□□□□ -0.14
Hoxc11P31313 Gm9824-201ENSMUST00000178707 561 ntBASIC14.15□□□□□ -0.14
Hoxc11P31313 Gm8597-201ENSMUST00000191525 1109 ntBASIC14.15□□□□□ -0.14
Hoxc11P31313 Gm38225-201ENSMUST00000194001 393 ntBASIC14.15□□□□□ -0.14
Hoxc11P31313 Timm13-201ENSMUST00000020440 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Hoxc11P31313 5830408C22Rik-201ENSMUST00000210072 1115 ntTSL 5 BASIC14.15□□□□□ -0.14
Hoxc11P31313 Gzma-201ENSMUST00000023897 878 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Hoxc11P31313 Pts-201ENSMUST00000034570 1046 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Hoxc11P31313 Map7d1-203ENSMUST00000122129 3249 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Hoxc11P31313 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Hoxc11P31313 Ralyl-206ENSMUST00000193117 2933 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
Hoxc11P31313 Nr3c2-204ENSMUST00000109913 5916 ntAPPRIS P2 TSL 5 BASIC14.15□□□□□ -0.14
Hoxc11P31313 Plcl1-201ENSMUST00000042986 6580 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Hoxc11P31313 Fam57b-203ENSMUST00000205324 1915 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Hoxc11P31313 Rbpms2-202ENSMUST00000169003 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Hoxc11P31313 Kcnh4-202ENSMUST00000107363 3948 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Hoxc11P31313 Esrrb-206ENSMUST00000167891 1344 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.15
Hoxc11P31313 Vangl2-202ENSMUST00000111263 6528 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.15
Hoxc11P31313 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 37.1 ms