Protein–RNA interactions for Protein: O35493

Clk4, Dual specificity protein kinase CLK4, mousemouse

Predictions only

Length 481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk4O35493 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC14.06□□□□□ -0.16
Clk4O35493 Hdhd2-203ENSMUST00000097522 2318 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Clk4O35493 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Clk4O35493 Kpnb1-201ENSMUST00000001479 5894 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Clk4O35493 Eif5-201ENSMUST00000050993 1969 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Clk4O35493 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Clk4O35493 Gm8096-201ENSMUST00000209921 1591 ntBASIC14.05□□□□□ -0.16
Clk4O35493 Ppp1r18-204ENSMUST00000144382 2536 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Clk4O35493 Foxp2-207ENSMUST00000115477 6760 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
Clk4O35493 Tsc2-221ENSMUST00000228412 5432 ntAPPRIS ALT2 BASIC14.05□□□□□ -0.16
Clk4O35493 Col7a1-202ENSMUST00000112070 9250 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Clk4O35493 Suv39h1-203ENSMUST00000115638 3116 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Clk4O35493 Cry2-202ENSMUST00000111278 2160 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Clk4O35493 Rnf152-201ENSMUST00000058688 8492 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Clk4O35493 Tgfbr3-201ENSMUST00000031224 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Clk4O35493 2210011K15Rik-201ENSMUST00000190690 1741 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Clk4O35493 Npc2-201ENSMUST00000021668 3299 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Clk4O35493 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Clk4O35493 Tmem9b-202ENSMUST00000118571 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Clk4O35493 Evx1-202ENSMUST00000129243 1034 ntTSL 3 BASIC14.05□□□□□ -0.16
Clk4O35493 A530058N18Rik-205ENSMUST00000143993 550 ntTSL 3 BASIC14.05□□□□□ -0.16
Clk4O35493 Rpl26-206ENSMUST00000167436 606 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Clk4O35493 Gm26756-201ENSMUST00000181689 1294 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Clk4O35493 1700030N18Rik-201ENSMUST00000202497 966 ntBASIC14.05□□□□□ -0.16
Clk4O35493 CT943659.1-201ENSMUST00000215459 326 ntBASIC14.05□□□□□ -0.16
Clk4O35493 Slbp-202ENSMUST00000075670 1027 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Clk4O35493 Crxos-201ENSMUST00000098801 934 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Clk4O35493 Tex13a-201ENSMUST00000096314 1317 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Clk4O35493 Phf21a-206ENSMUST00000111292 2461 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
Clk4O35493 Anp32e-201ENSMUST00000015893 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Clk4O35493 Fbxo27-201ENSMUST00000039998 1946 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
Clk4O35493 Acin1-201ENSMUST00000022793 4735 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
Clk4O35493 Coro6-201ENSMUST00000021190 1418 ntAPPRIS P5 TSL 1 (best) BASIC14.05□□□□□ -0.16
Clk4O35493 Ylpm1-207ENSMUST00000168977 4893 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
Clk4O35493 Hspa8-202ENSMUST00000117557 2019 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Clk4O35493 Fbxo28-201ENSMUST00000051431 4925 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Clk4O35493 Efnb1-201ENSMUST00000052839 3258 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Clk4O35493 Nck1-202ENSMUST00000116522 4476 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Clk4O35493 Lamp2-203ENSMUST00000074913 2184 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Clk4O35493 Fancm-201ENSMUST00000058889 7775 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Clk4O35493 Klhl12-201ENSMUST00000027725 3408 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Clk4O35493 Vps53-201ENSMUST00000056601 2833 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Clk4O35493 Kat8-201ENSMUST00000033070 1579 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Clk4O35493 Iqcj-201ENSMUST00000063263 1579 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Clk4O35493 Zfp385a-201ENSMUST00000168828 2291 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clk4O35493 Prss36-202ENSMUST00000118755 3028 ntAPPRIS P2 TSL 5 BASIC14.04□□□□□ -0.16
Clk4O35493 Nos1ap-202ENSMUST00000160456 3022 ntAPPRIS P2 TSL 5 BASIC14.04□□□□□ -0.16
Clk4O35493 P4ha1-202ENSMUST00000092512 2387 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Clk4O35493 Foxo4-201ENSMUST00000062000 3162 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clk4O35493 Eif3f-201ENSMUST00000033342 2514 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clk4O35493 Mpped1-203ENSMUST00000109470 3281 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clk4O35493 Ptn-202ENSMUST00000201321 2558 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Clk4O35493 Ephb2-201ENSMUST00000059287 4804 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
Clk4O35493 Josd1-201ENSMUST00000023061 3394 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clk4O35493 Ankrd27-202ENSMUST00000186245 1926 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Clk4O35493 Arid4b-201ENSMUST00000039538 5844 ntTSL 5 BASIC14.04□□□□□ -0.16
Clk4O35493 Hykk-201ENSMUST00000039742 5110 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clk4O35493 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC14.04□□□□□ -0.16
Clk4O35493 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Clk4O35493 Gm4913-201ENSMUST00000117075 1290 ntBASIC14.04□□□□□ -0.16
Clk4O35493 Gm12134-201ENSMUST00000122109 520 ntBASIC14.04□□□□□ -0.16
Clk4O35493 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Clk4O35493 Gm37935-201ENSMUST00000192012 982 ntBASIC14.04□□□□□ -0.16
Clk4O35493 Gm45612-201ENSMUST00000211320 160 ntBASIC14.04□□□□□ -0.16
Clk4O35493 Vkorc1-201ENSMUST00000033074 748 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clk4O35493 Nkx6-3-201ENSMUST00000071588 2238 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clk4O35493 Gm4756-202ENSMUST00000208039 2344 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Clk4O35493 Lypd1-201ENSMUST00000027582 1447 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Clk4O35493 Fam208b-201ENSMUST00000096069 8338 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clk4O35493 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clk4O35493 Rnase10-202ENSMUST00000164632 1521 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clk4O35493 Sh3bp5-201ENSMUST00000091903 2684 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clk4O35493 Aph1a-202ENSMUST00000056710 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clk4O35493 Dnajc27-202ENSMUST00000049584 2934 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
Clk4O35493 Ppp2r5c-201ENSMUST00000084985 1847 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
Clk4O35493 Nop56-202ENSMUST00000103198 1877 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clk4O35493 Ddc-201ENSMUST00000066237 1922 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Clk4O35493 Tom1l2-205ENSMUST00000102682 2256 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Clk4O35493 Gins2-201ENSMUST00000034278 3900 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Clk4O35493 Ap4b1-204ENSMUST00000106824 2412 ntTSL 5 BASIC14.03□□□□□ -0.16
Clk4O35493 E230029C05Rik-202ENSMUST00000207458 2445 ntTSL 5 BASIC14.03□□□□□ -0.16
Clk4O35493 Sike1-201ENSMUST00000029447 7375 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Clk4O35493 Zfp74-203ENSMUST00000108211 1278 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Clk4O35493 Olfr1344-201ENSMUST00000168341 1061 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Clk4O35493 Gm26768-201ENSMUST00000181097 966 ntTSL 5 BASIC14.03□□□□□ -0.16
Clk4O35493 Tspan32-211ENSMUST00000207211 1220 ntTSL 5 BASIC14.03□□□□□ -0.16
Clk4O35493 Msrb2-201ENSMUST00000023856 1196 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Clk4O35493 Hcrt-201ENSMUST00000055083 586 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Clk4O35493 Eif5a-203ENSMUST00000071026 1286 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Clk4O35493 Sphk1-211ENSMUST00000141798 1532 ntAPPRIS P4 TSL 1 (best) BASIC14.03□□□□□ -0.16
Clk4O35493 Arl5c-201ENSMUST00000042971 1571 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Clk4O35493 Tpi1-205ENSMUST00000172132 1607 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Clk4O35493 2310011J03Rik-201ENSMUST00000020341 1649 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Clk4O35493 Idh3b-201ENSMUST00000028892 1616 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Clk4O35493 Pde4d-204ENSMUST00000117879 1724 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Clk4O35493 Pafah1b1-202ENSMUST00000102520 5789 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Clk4O35493 Pld3-201ENSMUST00000117095 2282 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Clk4O35493 Kif3a-201ENSMUST00000057330 2290 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Clk4O35493 Mcoln2-201ENSMUST00000011152 2520 ntAPPRIS P4 TSL 1 (best) BASIC14.03□□□□□ -0.16
Clk4O35493 Ube2d3-210ENSMUST00000197539 2515 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 58.8 ms