Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Rprl2-201ENSMUST00000157150 290 ntBASIC17.66■□□□□ 0.42
Brf1Q8CFK2 Gm45208-202ENSMUST00000208156 1153 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Brf1Q8CFK2 Dpp7-201ENSMUST00000028332 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Brf1Q8CFK2 Kcnh1-201ENSMUST00000078470 7242 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Brf1Q8CFK2 Hs3st3b1-201ENSMUST00000094103 4911 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Brf1Q8CFK2 Pid1-207ENSMUST00000177458 2521 ntTSL 2 BASIC17.66■□□□□ 0.42
Brf1Q8CFK2 Eif4a3-201ENSMUST00000026667 1509 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Brf1Q8CFK2 Gatm-201ENSMUST00000028624 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Brf1Q8CFK2 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Brf1Q8CFK2 Cacna2d3-201ENSMUST00000022567 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Brf1Q8CFK2 Nyap1-204ENSMUST00000212152 2499 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Brf1Q8CFK2 Ppp2r5b-201ENSMUST00000025695 2742 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Brf1Q8CFK2 Anks1b-202ENSMUST00000099366 2549 ntTSL 5 BASIC17.65■□□□□ 0.42
Brf1Q8CFK2 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Brf1Q8CFK2 Fndc7-201ENSMUST00000053065 3009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Brf1Q8CFK2 Klhl11-201ENSMUST00000056665 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Brf1Q8CFK2 Pcolce2-201ENSMUST00000015498 4438 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Brf1Q8CFK2 Hnrnpul1-205ENSMUST00000206832 3784 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Brf1Q8CFK2 Tbc1d16-203ENSMUST00000207655 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Brf1Q8CFK2 Gm23547-201ENSMUST00000158210 271 ntBASIC17.65■□□□□ 0.42
Brf1Q8CFK2 Gm16163-201ENSMUST00000161868 1119 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Brf1Q8CFK2 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
Brf1Q8CFK2 1190007I07Rik-203ENSMUST00000183363 406 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Brf1Q8CFK2 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Brf1Q8CFK2 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Brf1Q8CFK2 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Brf1Q8CFK2 Lamc1-201ENSMUST00000027752 7622 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Brf1Q8CFK2 Ppp1r18-204ENSMUST00000144382 2536 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Brf1Q8CFK2 Dlc1-203ENSMUST00000098826 6241 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Brf1Q8CFK2 Grn-201ENSMUST00000049460 2340 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Brf1Q8CFK2 Zbtb7b-204ENSMUST00000107435 4333 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Brf1Q8CFK2 Coq6-203ENSMUST00000110278 1354 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Brf1Q8CFK2 Cdcp2-202ENSMUST00000221740 1623 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Brf1Q8CFK2 Nyap1-201ENSMUST00000061789 3912 ntAPPRIS P3 TSL 5 BASIC17.65■□□□□ 0.42
Brf1Q8CFK2 Ece2-201ENSMUST00000003898 3152 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Brf1Q8CFK2 Chd3-201ENSMUST00000092971 6066 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.42
Brf1Q8CFK2 Gm45605-201ENSMUST00000210265 4269 ntBASIC17.64■□□□□ 0.42
Brf1Q8CFK2 Iqce-202ENSMUST00000077890 2494 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.42
Brf1Q8CFK2 Bag4-201ENSMUST00000038498 4876 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Brf1Q8CFK2 Otud4-202ENSMUST00000173078 7354 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.41
Brf1Q8CFK2 Plppr2-202ENSMUST00000188468 1480 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
Brf1Q8CFK2 Tmem59l-201ENSMUST00000045286 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Brf1Q8CFK2 Foxa1-201ENSMUST00000044380 3191 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Brf1Q8CFK2 Rab22a-201ENSMUST00000029024 7155 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Brf1Q8CFK2 Dnajc8-205ENSMUST00000105939 746 ntTSL 5 BASIC17.64■□□□□ 0.41
Brf1Q8CFK2 Ppil3-202ENSMUST00000114345 1175 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Brf1Q8CFK2 Crybb3-202ENSMUST00000117143 749 ntAPPRIS P1 TSL 3 BASIC17.64■□□□□ 0.41
Brf1Q8CFK2 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC17.64■□□□□ 0.41
Brf1Q8CFK2 Mmab-203ENSMUST00000123256 1277 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Brf1Q8CFK2 Ms4a6d-202ENSMUST00000125291 679 ntTSL 3 BASIC17.64■□□□□ 0.41
Brf1Q8CFK2 Gm13496-201ENSMUST00000141133 1165 ntTSL 2 BASIC17.64■□□□□ 0.41
Brf1Q8CFK2 Ankrd13d-204ENSMUST00000167215 639 ntTSL 3 BASIC17.64■□□□□ 0.41
Brf1Q8CFK2 Gm27702-201ENSMUST00000184512 56 ntBASIC17.64■□□□□ 0.41
Brf1Q8CFK2 Gm37935-201ENSMUST00000192012 982 ntBASIC17.64■□□□□ 0.41
Brf1Q8CFK2 Gm37230-201ENSMUST00000194491 818 ntBASIC17.64■□□□□ 0.41
Brf1Q8CFK2 9230114J08Rik-201ENSMUST00000200375 350 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Brf1Q8CFK2 Slc12a5-208ENSMUST00000202479 1202 ntTSL 5 BASIC17.64■□□□□ 0.41
Brf1Q8CFK2 Fam71e1-204ENSMUST00000205422 366 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Brf1Q8CFK2 Guca2b-201ENSMUST00000044426 605 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Brf1Q8CFK2 Nudt18-203ENSMUST00000228768 1578 ntBASIC17.64■□□□□ 0.41
Brf1Q8CFK2 Cobl-201ENSMUST00000046755 5615 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
Brf1Q8CFK2 Gm6018-201ENSMUST00000216090 1306 ntBASIC17.64■□□□□ 0.41
Brf1Q8CFK2 4933412A08Rik-201ENSMUST00000061046 1343 ntBASIC17.64■□□□□ 0.41
Brf1Q8CFK2 BC026585-201ENSMUST00000046743 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Brf1Q8CFK2 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Brf1Q8CFK2 Galnt18-202ENSMUST00000106663 2530 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Brf1Q8CFK2 Miga1-204ENSMUST00000199334 4024 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Brf1Q8CFK2 Ythdf3-203ENSMUST00000191774 3196 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Brf1Q8CFK2 Drd5-201ENSMUST00000041646 3152 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
Brf1Q8CFK2 Arpin-201ENSMUST00000048731 2277 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Brf1Q8CFK2 Chst8-204ENSMUST00000205259 1980 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
Brf1Q8CFK2 Fundc1-201ENSMUST00000026016 1983 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Brf1Q8CFK2 Atp4b-201ENSMUST00000033826 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Brf1Q8CFK2 Gm10676-201ENSMUST00000098778 3221 ntBASIC17.64■□□□□ 0.41
Brf1Q8CFK2 Kcnip1-202ENSMUST00000101368 2322 ntTSL 2 BASIC17.64■□□□□ 0.41
Brf1Q8CFK2 Acadm-201ENSMUST00000072697 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Brf1Q8CFK2 Lmcd1-201ENSMUST00000032376 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Brf1Q8CFK2 Tsc22d4-203ENSMUST00000100540 2730 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Brf1Q8CFK2 Afg3l2-201ENSMUST00000025408 3085 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Brf1Q8CFK2 Spred1-201ENSMUST00000028829 6016 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Brf1Q8CFK2 Cpeb2-205ENSMUST00000169035 7050 ntAPPRIS P2 TSL 5 BASIC17.63■□□□□ 0.41
Brf1Q8CFK2 Cry2-202ENSMUST00000111278 2160 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Brf1Q8CFK2 Vwa5b2-203ENSMUST00000100074 2512 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
Brf1Q8CFK2 Gopc-201ENSMUST00000020008 4216 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Brf1Q8CFK2 Eldr-203ENSMUST00000130392 1540 ntTSL 2 BASIC17.63■□□□□ 0.41
Brf1Q8CFK2 Ap3s1-201ENSMUST00000025357 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Brf1Q8CFK2 Nell1-201ENSMUST00000081872 6617 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Brf1Q8CFK2 Mapk9-210ENSMUST00000178543 4677 ntAPPRIS ALT1 TSL 5 BASIC17.63■□□□□ 0.41
Brf1Q8CFK2 Myl12a-206ENSMUST00000148960 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Brf1Q8CFK2 Slc25a47-201ENSMUST00000057026 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Brf1Q8CFK2 Hist1h1e-201ENSMUST00000062045 1930 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
Brf1Q8CFK2 Caprin2-201ENSMUST00000072324 2952 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Brf1Q8CFK2 Prkg1-206ENSMUST00000182685 1628 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Brf1Q8CFK2 Fbxo44-202ENSMUST00000105705 1034 ntTSL 2 BASIC17.63■□□□□ 0.41
Brf1Q8CFK2 Tmsb4x-202ENSMUST00000112175 864 ntTSL 2 BASIC17.63■□□□□ 0.41
Brf1Q8CFK2 Dph3-205ENSMUST00000124303 809 ntTSL 2 BASIC17.63■□□□□ 0.41
Brf1Q8CFK2 Gm20481-201ENSMUST00000173680 564 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
Brf1Q8CFK2 Gm18889-201ENSMUST00000174284 929 ntBASIC17.63■□□□□ 0.41
Brf1Q8CFK2 Smim4-204ENSMUST00000203261 1219 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Brf1Q8CFK2 Epc1-202ENSMUST00000050542 565 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 26.1 ms