Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Nme1-202ENSMUST00000107844 452 ntTSL 3 BASIC17.25■□□□□ 0.35
Trim56Q80VI1 Oprl1-203ENSMUST00000108766 1241 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Trim56Q80VI1 Gm6415-201ENSMUST00000118488 348 ntBASIC17.25■□□□□ 0.35
Trim56Q80VI1 9330020H09Rik-201ENSMUST00000163781 2147 ntTSL 2 BASIC17.25■□□□□ 0.35
Trim56Q80VI1 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC17.25■□□□□ 0.35
Trim56Q80VI1 Skiv2l-ps1-201ENSMUST00000173935 658 ntBASIC17.25■□□□□ 0.35
Trim56Q80VI1 Gm22175-201ENSMUST00000175007 78 ntBASIC17.25■□□□□ 0.35
Trim56Q80VI1 Gm38294-201ENSMUST00000192831 381 ntBASIC17.25■□□□□ 0.35
Trim56Q80VI1 Lce1c-201ENSMUST00000047055 724 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim56Q80VI1 Rtl8c-201ENSMUST00000063384 401 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
Trim56Q80VI1 Ccdc172-201ENSMUST00000069419 1086 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim56Q80VI1 Ubqln1-201ENSMUST00000058735 3686 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim56Q80VI1 Gm4081-201ENSMUST00000195287 1838 ntBASIC17.25■□□□□ 0.35
Trim56Q80VI1 Nap1l1-208ENSMUST00000219961 1512 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Trim56Q80VI1 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim56Q80VI1 Pxn-213ENSMUST00000202564 2126 ntTSL 5 BASIC17.24■□□□□ 0.35
Trim56Q80VI1 4933421O10Rik-201ENSMUST00000155691 3847 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Trim56Q80VI1 Cobl-203ENSMUST00000109651 5541 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim56Q80VI1 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim56Q80VI1 Dnajc22-201ENSMUST00000061295 1564 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim56Q80VI1 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC17.24■□□□□ 0.35
Trim56Q80VI1 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim56Q80VI1 Hsd17b14-201ENSMUST00000107752 1400 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Trim56Q80VI1 Pdk1-201ENSMUST00000006669 5185 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim56Q80VI1 Gm21983-201ENSMUST00000154724 1690 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
Trim56Q80VI1 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim56Q80VI1 Tdrd7-201ENSMUST00000102929 3716 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim56Q80VI1 Bcor-204ENSMUST00000115513 6941 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim56Q80VI1 Ppil3-203ENSMUST00000114348 1033 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim56Q80VI1 Orai3-202ENSMUST00000118865 768 ntTSL 3 BASIC17.24■□□□□ 0.35
Trim56Q80VI1 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Trim56Q80VI1 Gm12264-201ENSMUST00000123949 500 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Trim56Q80VI1 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC17.24■□□□□ 0.35
Trim56Q80VI1 Styxl1-207ENSMUST00000177559 1236 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Trim56Q80VI1 Prok2-204ENSMUST00000203738 695 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Trim56Q80VI1 Krtap19-4-201ENSMUST00000051103 304 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
Trim56Q80VI1 2810006K23Rik-202ENSMUST00000111477 1637 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Trim56Q80VI1 G3bp2-209ENSMUST00000202258 1884 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim56Q80VI1 Faf1-201ENSMUST00000102724 4468 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim56Q80VI1 Atp2c2-201ENSMUST00000095171 3222 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim56Q80VI1 Klhl26-202ENSMUST00000166976 2734 ntTSL 2 BASIC17.24■□□□□ 0.35
Trim56Q80VI1 Cpz-201ENSMUST00000038676 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim56Q80VI1 Mtfr2-201ENSMUST00000169712 1991 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim56Q80VI1 Fundc1-201ENSMUST00000026016 1983 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim56Q80VI1 Kif21a-204ENSMUST00000109287 6124 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim56Q80VI1 Kif21a-205ENSMUST00000109288 6142 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim56Q80VI1 D130052B06Rik-201ENSMUST00000101371 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim56Q80VI1 Klhdc4-210ENSMUST00000174717 1662 ntTSL 5 BASIC17.23■□□□□ 0.35
Trim56Q80VI1 Slc20a2-201ENSMUST00000067786 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim56Q80VI1 Klhl11-201ENSMUST00000056665 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim56Q80VI1 Adgrg5-205ENSMUST00000166802 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim56Q80VI1 Braf-201ENSMUST00000002487 9728 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim56Q80VI1 Gm9252-201ENSMUST00000172364 1602 ntBASIC17.23■□□□□ 0.35
Trim56Q80VI1 Fis1-203ENSMUST00000111097 601 ntTSL 2 BASIC17.23■□□□□ 0.35
Trim56Q80VI1 Mmab-202ENSMUST00000112245 644 ntTSL 3 BASIC17.23■□□□□ 0.35
Trim56Q80VI1 Stra8-202ENSMUST00000114997 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim56Q80VI1 Gm6539-201ENSMUST00000119157 1064 ntBASIC17.23■□□□□ 0.35
Trim56Q80VI1 Hras-203ENSMUST00000124314 1073 ntTSL 5 BASIC17.23■□□□□ 0.35
Trim56Q80VI1 Sumo3-204ENSMUST00000129492 487 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
Trim56Q80VI1 U2af1l4-216ENSMUST00000166510 835 ntTSL 5 BASIC17.23■□□□□ 0.35
Trim56Q80VI1 Erdr1-204ENSMUST00000179483 688 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Trim56Q80VI1 Ssty1-201ENSMUST00000180056 699 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
Trim56Q80VI1 Mir6956-201ENSMUST00000183598 62 ntBASIC17.23■□□□□ 0.35
Trim56Q80VI1 Gm29310-201ENSMUST00000185468 696 ntBASIC17.23■□□□□ 0.35
Trim56Q80VI1 Gm21825-201ENSMUST00000185728 696 ntBASIC17.23■□□□□ 0.35
Trim56Q80VI1 Gm29109-201ENSMUST00000185895 696 ntBASIC17.23■□□□□ 0.35
Trim56Q80VI1 Gm21896-201ENSMUST00000186520 696 ntBASIC17.23■□□□□ 0.35
Trim56Q80VI1 Gm21873-201ENSMUST00000186728 696 ntBASIC17.23■□□□□ 0.35
Trim56Q80VI1 Gm21794-201ENSMUST00000187056 696 ntBASIC17.23■□□□□ 0.35
Trim56Q80VI1 Gm21880-201ENSMUST00000187275 696 ntBASIC17.23■□□□□ 0.35
Trim56Q80VI1 Gm21826-201ENSMUST00000187451 696 ntBASIC17.23■□□□□ 0.35
Trim56Q80VI1 Gm21198-201ENSMUST00000188393 696 ntBASIC17.23■□□□□ 0.35
Trim56Q80VI1 Gm21749-201ENSMUST00000189343 696 ntBASIC17.23■□□□□ 0.35
Trim56Q80VI1 Gm21901-201ENSMUST00000189568 696 ntBASIC17.23■□□□□ 0.35
Trim56Q80VI1 Gm29424-201ENSMUST00000189716 696 ntBASIC17.23■□□□□ 0.35
Trim56Q80VI1 Gm28599-201ENSMUST00000189838 694 ntBASIC17.23■□□□□ 0.35
Trim56Q80VI1 Gm21867-201ENSMUST00000189917 696 ntBASIC17.23■□□□□ 0.35
Trim56Q80VI1 Gm29269-201ENSMUST00000190087 696 ntBASIC17.23■□□□□ 0.35
Trim56Q80VI1 Gm21722-201ENSMUST00000190153 696 ntBASIC17.23■□□□□ 0.35
Trim56Q80VI1 Gm28423-201ENSMUST00000190701 696 ntBASIC17.23■□□□□ 0.35
Trim56Q80VI1 Gm21899-201ENSMUST00000190745 696 ntBASIC17.23■□□□□ 0.35
Trim56Q80VI1 Gm21910-201ENSMUST00000191163 696 ntBASIC17.23■□□□□ 0.35
Trim56Q80VI1 Gm21849-201ENSMUST00000191571 696 ntBASIC17.23■□□□□ 0.35
Trim56Q80VI1 Gm28678-201ENSMUST00000191593 696 ntBASIC17.23■□□□□ 0.35
Trim56Q80VI1 Fis1-201ENSMUST00000019198 786 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim56Q80VI1 Gm20910-201ENSMUST00000193268 696 ntBASIC17.23■□□□□ 0.35
Trim56Q80VI1 Gm21871-201ENSMUST00000194621 696 ntBASIC17.23■□□□□ 0.35
Trim56Q80VI1 Lin37-201ENSMUST00000043975 998 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim56Q80VI1 Galnt13-204ENSMUST00000112636 7530 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim56Q80VI1 Ppp2r5e-205ENSMUST00000220035 3135 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Trim56Q80VI1 Mfsd6l-201ENSMUST00000053211 2060 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
Trim56Q80VI1 Ttc13-210ENSMUST00000214828 3301 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Trim56Q80VI1 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim56Q80VI1 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Trim56Q80VI1 Fen1-204ENSMUST00000156291 2373 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
Trim56Q80VI1 Ptbp3-205ENSMUST00000148331 2016 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Trim56Q80VI1 Fbxo46-202ENSMUST00000165913 2498 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim56Q80VI1 Tmod2-207ENSMUST00000215462 1564 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Trim56Q80VI1 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
Trim56Q80VI1 Ptprt-201ENSMUST00000109441 6623 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 36.7 ms