Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Prnd-202ENSMUST00000110170 1969 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Nkx3-1P97436 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC12.62□□□□□ -0.39
Nkx3-1P97436 Gm10044-201ENSMUST00000081331 1312 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Nkx3-1P97436 Dmkn-204ENSMUST00000085691 2007 ntAPPRIS P4 TSL 1 (best) BASIC12.62□□□□□ -0.39
Nkx3-1P97436 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Nkx3-1P97436 Plekha1-202ENSMUST00000075181 2301 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Nkx3-1P97436 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
Nkx3-1P97436 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Nkx3-1P97436 Rbm26-203ENSMUST00000163499 4212 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Nkx3-1P97436 Kif1c-203ENSMUST00000102554 6684 ntAPPRIS P2 TSL 5 BASIC12.62□□□□□ -0.39
Nkx3-1P97436 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Nkx3-1P97436 Atf3-201ENSMUST00000027941 1984 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Nkx3-1P97436 Ggh-201ENSMUST00000098242 1965 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Nkx3-1P97436 Slc2a6-202ENSMUST00000102890 1887 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Nkx3-1P97436 Efhd1-201ENSMUST00000027472 1854 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Nkx3-1P97436 Tcf21-202ENSMUST00000218002 1788 ntBASIC12.62□□□□□ -0.39
Nkx3-1P97436 Ankrd33b-204ENSMUST00000123325 7466 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Nkx3-1P97436 Hist1h2ae-201ENSMUST00000102969 704 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
Nkx3-1P97436 Park7-205ENSMUST00000105676 582 ntTSL 5 BASIC12.62□□□□□ -0.39
Nkx3-1P97436 Mir1897-201ENSMUST00000122581 272 ntBASIC12.62□□□□□ -0.39
Nkx3-1P97436 Rpl34-203ENSMUST00000133802 711 ntTSL 2 BASIC12.62□□□□□ -0.39
Nkx3-1P97436 Ift27-201ENSMUST00000016781 1012 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Nkx3-1P97436 Trp53tg5-201ENSMUST00000017864 934 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Nkx3-1P97436 Wfdc2-201ENSMUST00000017867 849 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Nkx3-1P97436 Gm38182-203ENSMUST00000192984 993 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Nkx3-1P97436 Pcdhgc5-204ENSMUST00000193941 593 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Nkx3-1P97436 Cplx3-202ENSMUST00000215487 594 ntTSL 3 BASIC12.62□□□□□ -0.39
Nkx3-1P97436 Mrpl36-201ENSMUST00000022098 923 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Nkx3-1P97436 Lamtor1-201ENSMUST00000033131 1119 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Nkx3-1P97436 Ramp3-201ENSMUST00000045374 1233 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Nkx3-1P97436 Cav3-201ENSMUST00000075477 1157 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Nkx3-1P97436 Hist1h2ah-201ENSMUST00000091742 405 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
Nkx3-1P97436 Gm6471-201ENSMUST00000097935 805 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Nkx3-1P97436 Rlf-201ENSMUST00000056635 6242 ntAPPRIS P2 TSL 5 BASIC12.62□□□□□ -0.39
Nkx3-1P97436 Cdk18-201ENSMUST00000027697 4355 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Nkx3-1P97436 Dcaf17-201ENSMUST00000064141 1905 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Nkx3-1P97436 Ccdc103-201ENSMUST00000021307 1841 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Nkx3-1P97436 Snx14-206ENSMUST00000173039 2970 ntTSL 5 BASIC12.62□□□□□ -0.39
Nkx3-1P97436 Cog8-201ENSMUST00000034391 2954 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Nkx3-1P97436 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Nkx3-1P97436 Foxo3-201ENSMUST00000056974 2889 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Nkx3-1P97436 P2ry2-206ENSMUST00000208340 2693 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Nkx3-1P97436 Gm5320-201ENSMUST00000207163 1519 ntBASIC12.62□□□□□ -0.39
Nkx3-1P97436 Usp43-201ENSMUST00000021288 4462 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
Nkx3-1P97436 Adra2c-201ENSMUST00000049545 3445 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
Nkx3-1P97436 Pcp2-202ENSMUST00000128566 1447 ntAPPRIS ALT2 TSL 2 BASIC12.62□□□□□ -0.39
Nkx3-1P97436 Rprd1a-201ENSMUST00000046206 4297 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Nkx3-1P97436 Zdhhc19-201ENSMUST00000064192 1323 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Nkx3-1P97436 Ptpa-203ENSMUST00000113603 2169 ntTSL 5 BASIC12.62□□□□□ -0.39
Nkx3-1P97436 Tpm2-202ENSMUST00000107913 2098 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
Nkx3-1P97436 Ptprm-202ENSMUST00000223982 4802 ntAPPRIS P2 BASIC12.61□□□□□ -0.39
Nkx3-1P97436 Cul3-201ENSMUST00000163119 4709 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Nkx3-1P97436 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Nkx3-1P97436 Gm3365-201ENSMUST00000216296 1480 ntBASIC12.61□□□□□ -0.39
Nkx3-1P97436 Ahdc1-202ENSMUST00000105914 5898 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
Nkx3-1P97436 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Nkx3-1P97436 Anapc15-204ENSMUST00000106973 650 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
Nkx3-1P97436 Crybb3-204ENSMUST00000119627 828 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
Nkx3-1P97436 4930527A07Rik-201ENSMUST00000130677 559 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Nkx3-1P97436 Gm12454-201ENSMUST00000139119 978 ntTSL 2 BASIC12.61□□□□□ -0.39
Nkx3-1P97436 AC151971.1-201ENSMUST00000217329 993 ntTSL 5 BASIC12.61□□□□□ -0.39
Nkx3-1P97436 Pdlim7-203ENSMUST00000069968 1006 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Nkx3-1P97436 BC005537-201ENSMUST00000019276 5849 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Nkx3-1P97436 Kif12-205ENSMUST00000156618 2258 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Nkx3-1P97436 Phospho2-201ENSMUST00000028494 2260 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Nkx3-1P97436 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Nkx3-1P97436 Exoc6-201ENSMUST00000066439 2729 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Nkx3-1P97436 Hnrnph2-201ENSMUST00000050331 1701 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
Nkx3-1P97436 Siglecf-201ENSMUST00000012798 2510 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
Nkx3-1P97436 Zfp879-203ENSMUST00000109134 2414 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
Nkx3-1P97436 Zfp879-201ENSMUST00000049625 2408 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Nkx3-1P97436 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Nkx3-1P97436 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Nkx3-1P97436 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Nkx3-1P97436 9430015G10Rik-208ENSMUST00000169550 2660 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
Nkx3-1P97436 Ccdc88c-202ENSMUST00000085096 6313 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Nkx3-1P97436 Tpr-201ENSMUST00000119161 7480 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Nkx3-1P97436 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Nkx3-1P97436 Arhgap44-201ENSMUST00000047463 4074 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Nkx3-1P97436 Gm13074-201ENSMUST00000124848 2735 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Nkx3-1P97436 Actg1-204ENSMUST00000106215 1827 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Nkx3-1P97436 Oas1b-203ENSMUST00000183291 1837 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Nkx3-1P97436 Cyb5r1-201ENSMUST00000027726 1837 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Nkx3-1P97436 Trp53rkb-203ENSMUST00000151826 4426 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Nkx3-1P97436 Zpbp2-201ENSMUST00000017339 1455 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
Nkx3-1P97436 2610027K06Rik-203ENSMUST00000140673 2076 ntTSL 5 BASIC12.6□□□□□ -0.39
Nkx3-1P97436 Elfn2-201ENSMUST00000088592 4846 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Nkx3-1P97436 Gm3002-201ENSMUST00000170480 1955 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Nkx3-1P97436 Gm3005-202ENSMUST00000178728 1955 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Nkx3-1P97436 Adipor1-202ENSMUST00000112237 3446 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Nkx3-1P97436 Pde1c-203ENSMUST00000164037 3068 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Nkx3-1P97436 Pla2g2e-202ENSMUST00000105803 381 ntTSL 5 BASIC12.6□□□□□ -0.39
Nkx3-1P97436 Fbxw11-203ENSMUST00000109366 3821 ntAPPRIS ALT1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Nkx3-1P97436 Pebp1-202ENSMUST00000111973 779 ntTSL 3 BASIC12.6□□□□□ -0.39
Nkx3-1P97436 Gm13464-201ENSMUST00000119418 935 ntBASIC12.6□□□□□ -0.39
Nkx3-1P97436 Gm15701-201ENSMUST00000129559 573 ntTSL 3 BASIC12.6□□□□□ -0.39
Nkx3-1P97436 1700007J10Rik-202ENSMUST00000153431 1111 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Nkx3-1P97436 Pttg1ip-205ENSMUST00000162429 652 ntAPPRIS ALT2 TSL 2 BASIC12.6□□□□□ -0.39
Nkx3-1P97436 Gm17344-202ENSMUST00000173980 621 ntTSL 5 BASIC12.6□□□□□ -0.39
Nkx3-1P97436 Cyba-201ENSMUST00000017604 744 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 23 ms